Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00634 ATGGATCGCATCGAAGTTACTAATCTCAATCGTCAGTTTCTCTTCAGGCTTGAAGATGTTGGTAAGCCAAAAGCTGAGGTGGCTGCAAAACGTGTTATGGAGAGAGTTAGTGGTGTCAATATTCTGCCACATTTTTGCCGGATTGAGGACAAAGAAATTGAATTTTACAATGATTTTCACATAATCGCACTTGGTCTTGATTCAATTGAAGCTCGAAGTTACATCAATTCTGTTGCTTGTAGCTTCCTTGAGTATGATTCTGATGATAATCCATTAGAAGAAACAATTAAACCAATGGTAGATGGTGGAACTGAAGGCTTCAAGGGGCATGCAAGGGTAATTTTACCAGGGGTCACACCTTGCTTTGAGTGTACCATCTGGCTTTTTCCGCCTCAAGTAAAGTTTCCATTATGTACTCTAGCAGAAACTCCTAGAACTGCTGCTCATTGTATCGAGTATGCTCATCTAATTAAATGGGATGAGGTTCATAGTGGAAAAGCTTTTGATCCTGATGATTCTGAACACATGAAATGGGTTTACAGTGAGGCTCTTAAGAGGGCTGAGCTTTTTGGCATTCCGGGAGTTACATATTCACTAACTCAGGGTGTTGTTAAGAATATCATACCTGCTATTGCTTCCACCAATGCAATTATATCAGCTGCATGTGCACTGGAAACGTTGAAGATTGTATCAGGATGCAGCAAAACTCTATCCAACTACTTAACATATAATGGTGCTGAAGGTCTCCACACTAAAGTGACCGAGTTTGTGAAAGATAAGGACTGTCTTGTTTGTGGTCCAGGCGTTCTTATTGAGCTGGATTCTTCCATTACTTTACAGAAGTTCATTGACCTGCTAGAAGATTATCCCAAACTTTTGTTATCAAAGGCAAGTGTCACGCATCGAGGGAAGAATCTATACATGCAGGCACCTCCTGTACTTGAAGAGATGACCAGATCAAATTTGGGTGTTCCACTTTTTGACTTGATGGGTAAAGTTTTGAAGGACGTAGTCCATGTGACTGGTGTGGCTTCTAAGAATGATAAGAAAACTTCCTGTCTTCGAAAATTACGTGTGGCTTTTAAGGGGGTTGACGGTGTTACGGACATGGACACTGCAAGTGGGGCTTAA 1131 41.11 MDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNILPHFCRIEDKEIEFYNDFHIIALGLDSIEARSYINSVACSFLEYDSDDNPLEETIKPMVDGGTEGFKGHARVILPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKAFDPDDSEHMKWVYSEALKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSGCSKTLSNYLTYNGAEGLHTKVTEFVKDKDCLVCGPGVLIELDSSITLQKFIDLLEDYPKLLLSKASVTHRGKNLYMQAPPVLEEMTRSNLGVPLFDLMGKVLKDVVHVTGVASKNDKKTSCLRKLRVAFKGVDGVTDMDTASGA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4070736 4074984 - MELO3C006555.2.1 Cme06g00634 329783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00634 376 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 1 333 IPR035985 GO:0008641
Cme06g00634 376 SMART E2_bind_2 271 362 IPR014929 GO:0019781|GO:0045116
Cme06g00634 376 Pfam ThiF family 1 263 IPR000594 -
Cme06g00634 376 CDD Uba3_RUB 1 266 - -
Cme06g00634 376 PANTHER NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT 1 341 IPR030468 GO:0019781|GO:0045116
Cme06g00634 376 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 1 341 IPR045886 -
Cme06g00634 376 Pfam E2 binding domain 272 361 IPR014929 GO:0019781|GO:0045116
Cme06g00634 376 Gene3D - 270 357 - -
Cme06g00634 376 ProSitePatterns Ubiquitin-activating enzyme active site. 136 144 IPR033127 -
Cme06g00634 376 Gene3D - 1 269 - -
Cme06g00634 376 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 138 206 IPR023318 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00634 K10686 UBA3, UBE1C; NEDD8-activating enzyme E1 [EC:6.2.1.64] - csv:101209336 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00634 Cme-Chr6:4070736 Cme11g00143 Cme-Chr11:1449739 2.83E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g445 . . . . . Bpe14g01316 . . . . . Cma14g01683 . Car14g01517 Sed02g1264 . Cpe03g01420 Bhi01g00848 Tan10g0877 Cmetu06g2420 . Hepe05g1528 . Lcy11g1514 . . . . . . . Cone14ag0828 . . . Lsi05g01447 . . Cme06g00634 . . . . . . Bma02g00690 . . Cmo06g01432 Cmo14g01729 . . . . . . . . . . . . . Cla05g00570 Cam05g0626 Cec05g0637 Cco05g0632 Clacu05g0622 Cmu05g0590 Cre05g0659 . Csa03g01360 Chy06g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008479 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00634 Cme_Chr06 FPKM 2.473829 2.893941 0.0 1.743798 5.461562 3.170799 5.486804 0.0 0.283023 0.0