Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00641 TCCTTCTCCTTCTCCTCCTCCTCCTCCATTCTCTTCCTCCTCTTCTCCATTTCCATTGCCGCAACTTCCTTCACCCCCAAATCCCTCGTTCTCCCTGTCATCAAACATCCATCTCTCCAATACATCATCCAGATCCACCAACGAACTCCTCTGGTTCCAGTCAATCTCACGGTTGACCTCGGCGGTCGCTTCATGTGGGTCGACTGTGACCGTGGCTACGTTTCTTCCTCCTACAAACCCGCTCGCTGTCGCTCCGCCCAATGCTACCTCGCCAAATCCATTTCCTGCGGCAAATGCTATTTGCCGCCCCACCCCGGCTGCAACAACCACACTTGCCACCTTCCCGCCGAAAACACCGTTATCCAACTCTCCTCTAGCGGAGAAGTTACTTCCGACGTTGTCTCTGTTTCTTCCACCAACGACTTCAATCCAACCAGAGCCCTCTCCGTCCACAATTTCCTGTTCGTCTGCAGCTCGACTTTCCTCCTCGAAGGCCTTGCCGGCGGTGTAACTGGAATGGCAGGATTCGGAAGAACCAGAATCTCTCTACCATCCCAATTCGCCGCCGCCTTCAGCTTTAACCGGAAATTCACCGTGTGCTTGAGCGGCTCCACTAGATTCCCTGGCGTCATCTTCTCCGGTTACGGCCCATACCATTTCTTACCCAACACCGACTTAACAAATTCTCTCACTTATACCCCGTTGTTCATCAATCCCCTTGGCTTCGCCGGGGAAAAATCGTCGGATACCGTCAATCCATACACCGTACTGGAACCATCAATTTACAACGCGTTGGTGAAAACATTCACGACGGAGCTCGGGAACATTCCGAGAGTGGATGCGGTGGCGCCGTTTGAGGTGTGTTATAGTTCAAAGAGCTTTGGAAGTACTGAATTGGGGCCGGGTGTGGCATCGATTGATTTGATTTTGCAGAACAAAAAAGTGATTTGGAGAATGTTCGGTGCGAACTCGATGGTGCTTGTGAACGACGAGGTATTGTGCTTGGGATTTGTTGACGGTGGAGTGGAAGCGAAAACGGCGGTGGTGATTGGAGCCCACCAAATCGAGGATAATTTGCTTGAATTTGATTTGGCAACTTCTAGACTTGGATTTAGCTCAACTTTACTGGGACGTAACACTAATTGTGCTAATTTTAATTTATCCTGA 1167 50.47 SFSFSSSSSILFLLFSISIAATSFTPKSLVLPVIKHPSLQYIIQIHQRTPLVPVNLTVDLGGRFMWVDCDRGYVSSSYKPARCRSAQCYLAKSISCGKCYLPPHPGCNNHTCHLPAENTVIQLSSSGEVTSDVVSVSSTNDFNPTRALSVHNFLFVCSSTFLLEGLAGGVTGMAGFGRTRISLPSQFAAAFSFNRKFTVCLSGSTRFPGVIFSGYGPYHFLPNTDLTNSLTYTPLFINPLGFAGEKSSDTVNPYTVLEPSIYNALVKTFTTELGNIPRVDAVAPFEVCYSSKSFGSTELGPGVASIDLILQNKKVIWRMFGANSMVLVNDEVLCLGFVDGGVEAKTAVVIGAHQIEDNLLEFDLATSRLGFSSTLLGRNTNCANFNLS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4129294 4135206 - MELO3C006561.2.1 Cme06g00641 329790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00641 388 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 243 - -
Cme06g00641 388 ProSiteProfiles Peptidase family A1 domain profile. 41 372 IPR033121 -
Cme06g00641 388 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 242 386 - -
Cme06g00641 388 Pfam Xylanase inhibitor N-terminal 41 214 IPR032861 -
Cme06g00641 388 Pfam Xylanase inhibitor C-terminal 249 372 IPR032799 -
Cme06g00641 388 PANTHER ASPARTYL PROTEASE-RELATED 242 386 IPR001461 GO:0004190|GO:0006508
Cme06g00641 388 PANTHER ASPARTYL PROTEASE-RELATED 9 243 IPR001461 GO:0004190|GO:0006508
Cme06g00641 388 Gene3D Acid Proteases 216 388 IPR021109 -
Cme06g00641 388 SUPERFAMILY Acid proteases 34 382 IPR021109 -
Cme06g00641 388 Gene3D Acid Proteases 21 214 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00641 - - - csv:101210239 653.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00641 Cme-Chr6:4129294 Cme11g01932 Cme-Chr11:27367916 5.61E-67 dispersed
Cme06g00640 Cme-Chr6:4126311 Cme06g00641 Cme-Chr6:4129294 0 tandem
Cme06g00641 Cme-Chr6:4129294 Cme06g00642 Cme-Chr6:4136385 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g436 . . . Bda08g00394 . . . Bma05g00939 . . . . . . . Cpe08g00244 . . . . . . . . . . . . . . . . . . . . . . Cme06g00641 . . . . Bpe05g00757 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01367 Chy06g00610 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002462 3 1 0 5 3 2 2 2 1 3 1 2 2 3 3 2 2 4 2 2 3 1 1 1 1 1 2 2 1 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00641 Cme_Chr06 FPKM 16.609251 15.738559 146.007172 151.51442 51.175232 42.649677 49.240898 70.972527 75.272423 72.118736