Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00643 ATGGCTCATATTGCTGTGGAGAGAAACAGAAGAAGGCAAATGAATGAACATCTTAGGGTTTTGAGATCTTTAACCCCTTCTTTCTATATCAAAAGGGGAGATCAAGCCTCCATTATTGGGGGAGTCATAGAGTTCATCAAGGAGTTGCATCAAGTGTTGCAATCCTTGGAGTCGAATAAACGAAGGAGGAAGAGTATAAGCCCTAGCCCCGGTCCGAGCCCCAGGCCACAGCTGGTGGCTTTGGGGTCCGATAAAAGCCCGTTCGGATTTGAAAATGGAGTTGACGTCGGAGCATGTTGCAATTCATCGGTTGCGGATGTTGAAGCAAAGATTTCGGGTTCGAACGTGGTTTTGAAGATCATTTCTCGACGGATTCCCGGCCAACTTTCAAAGATGATTGGTGTCTTCGAGAGGCTGTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACGGTTCTATACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGAGGAATTAGCTTATGAAGTTCAACAAAGCTTTTGCTCTCAACTTTATTTATGCCAGTGA 573 44.33 MAHIAVERNRRRQMNEHLRVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPRPQLVALGSDKSPFGFENGVDVGACCNSSVADVEAKISGSNVVLKIISRRIPGQLSKMIGVFERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAYEVQQSFCSQLYLCQ 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4141834 4143450 + MELO3C006563.2.1 Cme06g00643 329792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00643 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 187 IPR044283 GO:0003700|GO:0010052
Cme06g00643 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Cme06g00643 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 62 IPR036638 GO:0046983
Cme06g00643 190 SMART finulus 4 55 IPR011598 GO:0046983
Cme06g00643 190 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Cme06g00643 190 Gene3D - 1 66 IPR036638 GO:0046983
Cme06g00643 190 PANTHER TRANSCRIPTION FACTOR MUTE 1 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00385 Cme-Chr6:2420541 Cme06g00643 Cme-Chr6:4141834 3.97E-52 dispersed
Cme06g00643 Cme-Chr6:4141834 Cme06g01106 Cme-Chr6:8340709 2.32E-27 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41450 PF00010 HLH 4.40E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00643 - - csv:101203445 346.665