Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00646 TTAGAAAACAGATGTCAACGGACGAACGGCGACTGTTCTTCAACTTCAGACAAATTACTTCTCCCAAATTTTCAACAGAAAAAAGATCCCAAATTTTCATTTCTTCTCCTCCGATCTCTCATTCTTGAAATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTACCTTCAGAACCCACCTCCACCTCCTCCTCCGCCCTACCTTTCTTCTTCCTCGTTCTATTACCCCCCTGAACCCCAATCTCTTTCTCCTGCTCCACCTCCGCCGCCACCGCCGCCCCCGCTTCAGACTCATCAGTTTACTAATTCTCACCCTCCCCCCCCGCACAGCCACCCTTACGGTTCAACTTCTCAGCCACTACCTCTGCCACCGATTCCTCATCCTCCTCCCCCTGCCCCTGCCCCTGCTCCTCACTCTTATTACTTCTCTGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTTACCCTTATTATGCTAATCAGAGTAATGGATGGTCTCAAATTCGGCCGCCCATGGGTCCGCCGTTGCTTCCGCCACCACCTTTGCCGATTGTGGAGCATCGGCAAGCGAAGAAGGTTAGAAATGATGTGAATGTACATAAAGATACTTTAAAGATTGAGGTGGACGAACAGAACCCTGGTCATCATTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGTTTGGGTCTTCCGGTCAACAAGTGTGGAGAAGATGGGGTGGAAGGCTTGATAAGCTCCTGTACTTCTCCTATCATCAGCTTCCTAATTGCTGCTTTGAAGATACTATTCTATTTCCTGTTTCTAATTCAATTTCATTACACGATGAACAGCATAACCATTCTATTTTTTGCCAAGGAAGAGCCCAATTGTAGGTTTGTTCCAGTATATCCCGATGCCTTCAAGCCAGTAAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCCGTAGGAACTGGCTTTGACTTGGGATTTTTTGACTTGGATGACCTCTCAAAACCTTCACCTGCAGAAGACACGTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCATCTCAGTCTGATGATGAACGAATGGGTGAACCTCAACAAGATAATTCACACATGCAAATAACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCCTTTCCAGGTTAAAGTGATTAGGCAACTACTGTGGATTGATGGAGTCAGATATGAGTTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTCATTTGCATGACTGAACCCAAGGATACTGCCGTACTACCATGCCGACATTTGGGTTTTGAGAAAGAGGCAATAATTTGGTTGGAATTGAAGAAAATGGGGAGGGAAATCATTGAGACACTCGCCGTTTTTGTATTGGCGTATTTGGAAAGTTATCCGATGTTATGTTTGAGAGATGAGAAGAGGAAGTTAAGACAGTTGTAG 1518 44.66 LENRCQRTNGDCSSTSDKLLLPNFQQKKDPKFSFLLLRSLILEMGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPPEPQSLSPAPPPPPPPPPLQTHQFTNSHPPPPHSHPYGSTSQPLPLPPIPHPPPPAPAPAPHSYYFSGGYNSCNYGNSSMGRFNFYPYYANQSNGWSQIRPPMGPPLLPPPPLPIVEHRQAKKVRNDVNVHKDTLKIEVDEQNPGHHLVSFVFDALYDGSLGLPVNKCGEDGVEGLISSCTSPIISFLIAALKILFYFLFLIQFHYTMNSITILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFDLDDLSKPSPAEDTFPLVISAETCSPSQSDDERMGEPQQDNSHMQITQAVLEKKNGGPFQVKVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLGFEKEAIIWLELKKMGREIIETLAVFVLAYLESYPMLCLRDEKRKLRQL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4160570 4166026 - MELO3C006565.2.1 Cme06g00646 329795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00646 505 MobiDBLite consensus disorder prediction 55 132 - -
Cme06g00646 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 478 IPR013083 -
Cme06g00646 505 PANTHER MAHOGUNIN 285 457 IPR045194 GO:0061630
Cme06g00646 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 44 238 - -
Cme06g00646 505 PANTHER MAHOGUNIN 44 238 IPR045194 GO:0061630
Cme06g00646 505 MobiDBLite consensus disorder prediction 57 73 - -
Cme06g00646 505 MobiDBLite consensus disorder prediction 80 132 - -
Cme06g00646 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 285 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00646 - - - cmo:103483745 613.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02534 Cme-Chr4:31591441 Cme06g00646 Cme-Chr6:4160570 6.11E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g431 . . . . . Bpe14g01321 . . . . Cma06g01434 Cma14g01676 Car06g01236 Car14g01510 Sed02g1274 Cpe08g00242 Cpe03g01415 Bhi01g00859 Tan10g0888 Cmetu04g1396 . Hepe05g1522 . Lcy11g1506 . . . . . . . . . Cone7ag0215 Cone4ag0207 Lsi05g01456 . . Cme06g00646 Blo02g00628 . . . . . . . . Cmo06g01437 Cmo14g01721 . . . . . . . . . . . . . Cla05g00579 Cam05g0636 Cec05g0645 Cco05g0640 . . Cre05g0667 . Csa03g01372 Chy06g00616 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007797 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00646 Cme_Chr06 FPKM 17.266479 19.114517 43.410599 45.101978 18.876568 18.509899 19.426229 18.723238 19.410332 21.729872