Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00653 ATGTCAGGTCCTCAATGCTGTTCAAACCCACCAACTCTAAACCCCAGCAGCGGCGCCGGCCATATCGAACAACTCGGCGGCCTTACCACCTACGTCTCCGGCTCCCCTGACTCCAAACGCGCTATCCTTTTTATTACCGATGTCTACGGATTTGAAGCTCCACTTGTAAGGAAGCTGGCCGATAAGGTTGCAGCTGCTGGGTTCTTTGTGGTTGCTCCTGATTTCTTCCATGGAGATCCATTTGTCCCAGATGATGCTAATAGGACCATTTCGGTTTGGTTACAAGATCATGGACCTGACAAGGGTTTTGATGATGCGAAGCCGGTGGTTGAAGCTCTGAAAAACAAAGGTATCTCAGCGATTGGAGCCGCAGGCGTTTGCTGGGGTGCCAAGGTTGTGGTTGAACTTGCAAAAGTGGAGTTGATTCAGGCTGCTGTGTTGCTGCATCCTTCGCTTGTCACTGTCGATGACATCAAAGGGGTCAAAGCTCACATTTTAATATTGGGAGCGGAGATCGATCAAATATCTCCTCCAGAACTCTTAAAACAATTTGAAGAAATCTTGTCTGCAAAGCCTGAGGTCGACGGGTTCGTAAAGATCTTTTCAAAGGTTTCTCATGGGTGGACTGTGAGGTACAATGTGGAAGATGCAGAGGCTATCAAATGTGCAGATGAAGCTCACGAGGACTTGTTGGCTTGGTTTACTATGTTAAGTAATTGA 720 47.64 MSGPQCCSNPPTLNPSSGAGHIEQLGGLTTYVSGSPDSKRAILFITDVYGFEAPLVRKLADKVAAAGFFVVAPDFFHGDPFVPDDANRTISVWLQDHGPDKGFDDAKPVVEALKNKGISAIGAAGVCWGAKVVVELAKVELIQAAVLLHPSLVTVDDIKGVKAHILILGAEIDQISPPELLKQFEEILSAKPEVDGFVKIFSKVSHGWTVRYNVEDAEAIKCADEAHEDLLAWFTMLSN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4218587 4222696 + MELO3C006572.2.1 Cme06g00653 329802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00653 239 SUPERFAMILY alpha/beta-Hydrolases 27 234 IPR029058 -
Cme06g00653 239 Pfam Dienelactone hydrolase family 30 235 IPR002925 GO:0016787
Cme06g00653 239 PANTHER DIENELACTONE HYDROLASE 1 235 - -
Cme06g00653 239 Gene3D alpha/beta hydrolase 23 238 IPR029058 -
Cme06g00653 239 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 1 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00653 - - - csv:101211476 439.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00652 Cme-Chr6:4213121 Cme06g00653 Cme-Chr6:4218587 2.53E-165 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g418 . . Bda03g01296 . . . . . . . . . . . Sed12g0894 . . Bhi01g00867 Tan10g0901 Cmetu06g0369 . . . Lcy11g1493 . . . . . . . Cone14ag0813 . . . Lsi05g01463 . . Cme06g00653 . . . . . . Bma02g00701 . . . . . . . . . . . . . . . . . Cla05g00585 Cam05g0643 Cec05g0652 Cco05g0647 Clacu05g0637 Cmu05g0605 Cre05g0674 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002887 1 2 1 1 0 2 1 2 2 1 2 2 1 2 1 1 2 2 1 2 1 4 1 4 3 2 1 2 2 5 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00653 Cme_Chr06 FPKM 11.217959 13.014274 12.45166 13.151869 3.575307 3.137699 3.095229 4.203155 4.582823 4.59597