Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00666 ATGGCTGCCCCATCTGCACCAGCTTCCATTCAGAAATCAGAGGAAGAATGGCAAGCTATACTCTCTCCGGAACAGTTTCGGATTCTTCGCCAGAAAGGAACTGAGCCTCGTGGCACTGGGAAATACGACAAGTTTTATGAAGAAGGAATATACCACTGTGCAGGCTGTGGAACCCCACTTTATAAGTCAAGCACCAAATTCAATTCTGGCTGCGGCTGGCCTGCTTTCTTTGAGGGTTTTCCTGGAGCAATTAATCGCTTTCCGGACCCTGATGGAAGGAGAACTGAGATAACATGTGCTGCATGTGGTGGGCATTTGGGTCACGTTTTTAAAGGCGAAGGGTTCGGGACACCTACTGATGAACGTCATTGTGTCAACAGCATTTCAGTCAAGTTTGCTCCTGCTAATGCTTCACAGTGA 420 47.86 MAAPSAPASIQKSEEEWQAILSPEQFRILRQKGTEPRGTGKYDKFYEEGIYHCAGCGTPLYKSSTKFNSGCGWPAFFEGFPGAINRFPDPDGRRTEITCAACGGHLGHVFKGEGFGTPTDERHCVNSISVKFAPANASQ 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4296522 4300025 + MELO3C006583.2.1 Cme06g00666 329815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00666 139 Pfam SelR domain 16 134 IPR002579 GO:0033743
Cme06g00666 139 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 14 135 IPR002579 GO:0033743
Cme06g00666 139 TIGRFAM TIGR00357: methionine-R-sulfoxide reductase 12 136 IPR002579 GO:0033743
Cme06g00666 139 SUPERFAMILY Mss4-like 10 136 IPR011057 -
Cme06g00666 139 PANTHER - 8 138 IPR028427 GO:0006979|GO:0016671|GO:0030091
Cme06g00666 139 Gene3D Peptide methionine sulfoxide reductase. 2 138 - -
Cme06g00666 139 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE B4-RELATED 8 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00666 K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] - csv:101213968 294.278
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00169 Cme-Chr1:1178241 Cme06g00666 Cme-Chr6:4296522 4.30E-45 dispersed
Cme06g00666 Cme-Chr6:4296522 Cme07g00436 Cme-Chr7:2878015 8.45E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g399 . . . . . . . . . . . Cma14g01662 . Car14g01495 Sed02g1286 . Cpe03g01403 Bhi01g00887 Tan10g0913 Cmetu06g0354 . Hepe05g1503 . Lcy11g1478 . . . . . . . . Cone15ag0804 . . Lsi05g01475 . . Cme06g00666 . Blo07g00198 Bda11g00551 . . Bpe13g00634 . Bma06g01530 . . Cmo14g01706 . . . . . . . . . . . . . Cla05g00595 Cam05g0655 Cec05g0663 Cco05g0659 Clacu05g0648 Cmu05g0617 Cre05g0685 . Csa03g01391 Chy06g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002864 2 2 1 2 1 1 3 1 2 2 1 1 2 2 2 3 1 2 3 2 2 2 2 1 2 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00666 Cme_Chr06 FPKM 49.039772 55.474628 62.891659 65.741943 32.288139 31.492826 35.561947 59.819653 61.538914 62.966263