Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00683 ATGAATCAGTACCACATCTATGAAGCTATTGGCCGTGGAAAGTATTCGACCGTGTATAAAGGGAGGAAGAAGAAGACGATTGAGTACTCCGCGATTAAAAGCGTGGATAAATCGCAGAAGAACAAGATTCTCCAAGAAACATTCACTTGGCCCCATCTTTTTGCGTTCGTAAGGTATGAAACTTCTGCTCACTTATGGCTGGTGTTAGAGTACTGTGTTGGAGGAGATCTCATGAGCATCCTGCGCCAGGATGGGAAATTACCTGAAGATTCAATTCATGATCTTGCCAGTGATCTTGTCAGAGCATTGCAGTACTTACACTCGAAAGGAATCATATACTGTGATTTGAAGCCATCAAATATCCTACTGGACGAAAATGGTCATATAAAGTTATGTGATTTCGAACTAGCTAGAAAGTTGAGTGAGATATCAAGAACAAATTCAACGGCTCCACAAACAAAACGAGGAACACCCTGTTATATGGCTCCTGAATTGTTCAAGGACGATGGTATCCACTCCTATGCGTCTGATATGTGGGCTCTTGGTTGTGTACTATATGAATGCTTTGTGGGGAGGCCTCCTTTTATGGGAAGAGAGTTCACTCAACTAGTAAAATCTATCCTCTCAGATCCTACCCCTATCCTTCCTGGTAGCCCTAGTCGTCCTTTTGTCAACTTGATTAACTCATTGCTAGTAAAAGATCCAGCCGAAAGAATACAATGGCCTGAGCTTTGTGGTCATGCATTCTGGCGAACTAAAATCACTCCAGTATCTTTACCTCCACAACCAGCTTTTGCAAATTTGATAAATCAACATTCCAAACCTTGTTTGTCGGAGAGGAATGGTGAAAAACTTGCTCAGAACAGGACTCCTCCTAAATATAGAGAGAAAGATGCAAAGGGCACTTTAAGACAAAATGAAAATTCTGCTTTTGGCTCAAGTAAAAATGAAACACTTGTTAAAGGTACTCCAGGCAGTCAAAAAACTCAATCAAAGGTTTCTAGCAAGGTGGTTGAGGAGAAGAAATTGAAAGAAACTCCATCTGCTTCCAAGGGAGTAAATCTTTTAAGACTTTCAAGGATAGCAAAATCAAACTTGCAAAGAGAGAATGATAAAGAAAATTACAGAAGACCCGTTTCTGGCAACTCCGAAAATGATTCTGAGGTTGAACTTAAGAACACTGACATGGAGCTTGATTTTAATGAGAATGTTGAAGATGAGTCTCATGATGAACCTGACGAGTCTGATAATTTAAATGGAAATCAAGAAGACAAGTCATCAAATGATAATCATCAGGGGAAGATGGAGGAGGCTCAAAATATGGGAGGAGACCTTTCAGATTATTCACCAGCTGTTAATATCAATGCCTCAGATCTATCAAATAAACATGATCAGGAATCACCCATGGTGCGTACAGAAGTAGTCGGTACTTCACCTAGTGCTAGCCCTCAACTTAAGAACCAAAGAACTAAAGAAGGTTCAACATATGCTCTTGATACTGATTCTTCTAAGTTATCCAATAACCTTTCAGAGTTTTTTTGGCATCAATCTGATCTTTCGGTTAAACCAGTAATGCCGAGCAAAAAAGCTGATAAAATGTCAGATGTTAATCCTACCACTCTTCCTTTCGAGGGATTGCAAGCACCTGATTTTGTGAAGATGCCTAAGGAGCGGCAGGATGCCACGAGCAGTAAGATTATTGCTACTCTCGGTGGAAATACTAGTGTTGGTGAAAAGCAAAACATGATTAGATATCTTGAGATGCTTAGTAATAATGCTGATGCAGCTAATATTTTGACCAATGGGCCCGTAATGCTCATGCTTGTAAAAATGCTCAAGCAGTCCAAGGTTTTGCAATTGCGTGTTCAACTCACGTCACTAATTGGCTTGCTGATTCGCCACTCTACTTTTATTGACAATGACTTGGCAAATTCTGGTCTTTTATTTTCACTTACTGATGGACTAAGAGACAAACAAGAAAAGGAAGAGCATAATAGCAACGCCAATCCTCCGGAGTCTCCTTTGAAGGAGACTAGATCTCCCTCTGGATGGCAGGTTCCAAATTCATTGATTTCTTTAGTCTCATCAATTCTTCGAAAAGGAGAGGATGATTTAACTCAACTATATGCATTGAGGACCATTGAAAACATTTGTAGTCAAGGAGCAATTTGGGCATCTCGCTTTACCAGCCAAGATGTGATTAGCAACCTCTGCTACATATATAGAGCTTCCGGGAAATCGGAAAATATAAGGCTCACGGCAGGATCATGTTTGGTTCGCCTAGTCCGTTTCAATCCTTCATGCATTCAGTCAGTTACAGACAAATTATCTTCGAAGGACATGGCATGTGCCCTAGTTAAGGGCAATCCACGTGAGCAGCAAATCACCTTAAATCTTCTAAACATGATCATGGTTGGAGGTCATGTATTAACCAGCATTGGAAGGTACCTTCTACCTTTGATGGAGGAGAAGAATCTTGTCTCCAGTCTCATATCCCTTATTGAGCAGGGAAGTGAAGTTTTGAAGGGAAAGGCAATTGTTTTCGTGGCTTTCCTTTGTAAGAGTGTAAGACGGTGGTTGCCTCACTTCTTTTGCAATGCTAGGTTACTTTCGTCAGTGGACAGGCTCGCAAGGGAGAAGGACGTCTATGTCCAGCAGTGTTTGACTGGATCTCTGCATATTGTGGCATCCATCGTGCCTAGTTTGTTGGATATGATTATTGGAGATATTCAACAAATGATGGGAGGACGACGTCATGGGCATATCTCCTCCCCCCTTACCAGTCGTGCTGCTCCAAAGACCAACATTCACTTGTTTCCTGTTGTCCTTCATCTTCTTGGAAGTTCAACCTTTAAGCGCAAGGTTGTTAATCCTCAGGTGCTGCAGCAATTGTCTGATCTAATCAGGCATATAGAAGCACCATTTCAGGGCAGGGATGACTTCCAGATAACTTTACTTCGGGTTATTGAATCTATCACAGAGGAAATCTCGGTCATACTTGAAAACCCAGAGATTTTTGTCCATAAAATTCTCCCCAGTTTGGCTGTTCTTTACAGAGGTAACAAGGATGGGGATGCAAGATTCTTATGTCTAAAAATTCTGTTTGATGCGATGGTCATTTTCCTCAATGAACCGTCCTTAGATGGGCATAGGTTGGAGGATCTAAAACAGATAGCAAATTTGCACTTTCTACCTCTCTATCCTGCCTTGATAGAAGATGATGATCCCATTCCCATGTACGCTCAGAAACTTCTCGTGATGCTCATCGAGTGTAACTACATCAAAATTTCAGACATTTTGCATCTAAAGACAATCTCCCAATGCTTTGAGTTTTTGCTTGGCGACCTTTCAAATGCAAATGTAAGTAGTGTAAAGCTATGTTTAGCGCTGGCATCTGCTCCAGAAATGGAATCAAGAATACTTTCTCAACTCAAAGTCGTTAGAAGAATAGGAATTTTACTGGAGTTTGTGTATGCAAAGGATATGGAAGATTTTCTCGAACCAACACTTGGCCTTTGTAGAGCTCTCCTTCTGCGTTCTGTTAGTTGTAGAAAGGGCTTCATCTACTCAAAAGAACCGTTTCTTCTGGGTGACGGTACTCCCGAACTAAATGTTCTTGTTAACCAGCTGGAATGCATTAGAGATATATCCGACTTTGGTAACAATCTTGGAGTTTTGTTGGAGTTAAGTGGCTCCTCAGAAGAAAATATTGCCGACATAGCCTCTGAATGTGTAGTGTTTTTGGTTACGGCGGCTCCTAGGGAAGGCACCACTGGTCTTCTTACAAATCTTCACAAAGTTAGTGTAATCCTGGAGTCCTGGCGGAGAGGTGGCTGCCTCTTACTTGTGCAGAGAATGCTGCATTCTCTCGGTTATGCTTGTCGACAGTACTTGGCCCATGCGATGATATTATCACTTTCCATGTCGGAAATTTCACGGATTGAGGCTATTATATCTGATATCAAGAGTTCAGGCACGCCACGTTTAGCTAATGATGCAATGCTTGTGGCTATGGAGTTGCAAAGACTTCATCGTTGTATTTGA 4044 41.39 MNQYHIYEAIGRGKYSTVYKGRKKKTIEYSAIKSVDKSQKNKILQETFTWPHLFAFVRYETSAHLWLVLEYCVGGDLMSILRQDGKLPEDSIHDLASDLVRALQYLHSKGIIYCDLKPSNILLDENGHIKLCDFELARKLSEISRTNSTAPQTKRGTPCYMAPELFKDDGIHSYASDMWALGCVLYECFVGRPPFMGREFTQLVKSILSDPTPILPGSPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKITPVSLPPQPAFANLINQHSKPCLSERNGEKLAQNRTPPKYREKDAKGTLRQNENSAFGSSKNETLVKGTPGSQKTQSKVSSKVVEEKKLKETPSASKGVNLLRLSRIAKSNLQRENDKENYRRPVSGNSENDSEVELKNTDMELDFNENVEDESHDEPDESDNLNGNQEDKSSNDNHQGKMEEAQNMGGDLSDYSPAVNINASDLSNKHDQESPMVRTEVVGTSPSASPQLKNQRTKEGSTYALDTDSSKLSNNLSEFFWHQSDLSVKPVMPSKKADKMSDVNPTTLPFEGLQAPDFVKMPKERQDATSSKIIATLGGNTSVGEKQNMIRYLEMLSNNADAANILTNGPVMLMLVKMLKQSKVLQLRVQLTSLIGLLIRHSTFIDNDLANSGLLFSLTDGLRDKQEKEEHNSNANPPESPLKETRSPSGWQVPNSLISLVSSILRKGEDDLTQLYALRTIENICSQGAIWASRFTSQDVISNLCYIYRASGKSENIRLTAGSCLVRLVRFNPSCIQSVTDKLSSKDMACALVKGNPREQQITLNLLNMIMVGGHVLTSIGRYLLPLMEEKNLVSSLISLIEQGSEVLKGKAIVFVAFLCKSVRRWLPHFFCNARLLSSVDRLAREKDVYVQQCLTGSLHIVASIVPSLLDMIIGDIQQMMGGRRHGHISSPLTSRAAPKTNIHLFPVVLHLLGSSTFKRKVVNPQVLQQLSDLIRHIEAPFQGRDDFQITLLRVIESITEEISVILENPEIFVHKILPSLAVLYRGNKDGDARFLCLKILFDAMVIFLNEPSLDGHRLEDLKQIANLHFLPLYPALIEDDDPIPMYAQKLLVMLIECNYIKISDILHLKTISQCFEFLLGDLSNANVSSVKLCLALASAPEMESRILSQLKVVRRIGILLEFVYAKDMEDFLEPTLGLCRALLLRSVSCRKGFIYSKEPFLLGDGTPELNVLVNQLECIRDISDFGNNLGVLLELSGSSEENIADIASECVVFLVTAAPREGTTGLLTNLHKVSVILESWRRGGCLLLVQRMLHSLGYACRQYLAHAMILSLSMSEISRIEAIISDIKSSGTPRLANDAMLVAMELQRLHRCI 1347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4446588 4453217 + MELO3C006602.2.1 Cme06g00683 329832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00683 1347 SUPERFAMILY Protein kinase-like (PK-like) 1 281 IPR011009 -
Cme06g00683 1347 MobiDBLite consensus disorder prediction 364 379 - -
Cme06g00683 1347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Cme06g00683 1347 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Cme06g00683 1347 SUPERFAMILY ARM repeat 579 908 IPR016024 -
Cme06g00683 1347 MobiDBLite consensus disorder prediction 304 333 - -
Cme06g00683 1347 MobiDBLite consensus disorder prediction 364 499 - -
Cme06g00683 1347 MobiDBLite consensus disorder prediction 658 683 - -
Cme06g00683 1347 Pfam Protein kinase domain 4 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00683 1347 MobiDBLite consensus disorder prediction 276 348 - -
Cme06g00683 1347 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cme06g00683 1347 SMART serkin_6 4 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00683 1347 MobiDBLite consensus disorder prediction 289 303 - -
Cme06g00683 1347 MobiDBLite consensus disorder prediction 668 683 - -
Cme06g00683 1347 ProSiteProfiles Protein kinase domain profile. 4 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00683 1347 Gene3D - 563 908 IPR011989 -
Cme06g00683 1347 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1343 IPR044591 GO:0000911|GO:0000914|GO:0008017
Cme06g00683 1347 MobiDBLite consensus disorder prediction 471 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00683 K17545 ULK4; serine/threonine-protein kinase ULK4 [EC:2.7.11.1] - csv:101217007 2508.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00683 Cme-Chr6:4446588 Cme09g01504 Cme-Chr9:20204421 3.06E-44 dispersed
Cme06g00683 Cme-Chr6:4446588 Cme07g00116 Cme-Chr7:765253 7.73E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g370 . . . . . Bpe14g01152 . . . . . Cma14g01648 . Car14g01481 . . Cpe03g01392 Bhi01g00926 . . . . . Lcy11g1459 . . . . . . . . . Cone7ag0183 Cone4ag0178 Lsi05g01496 . . Cme06g00683 Blo02g00576 . . . . . . . . . Cmo14g01692 . . . . . . . . . . . . . Cla05g00610 . . . . . . . Csa03g01408 Chy06g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009196 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64941 PF00069 Pkinase 7.00E-56 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00683 Cme_Chr06 FPKM 0.0 0.0 3.633096 2.42334 9.01604 8.088971 6.228674 0.0 0.0 0.0