Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00687 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTCTTGGTTAGAATCGAGAGTTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTGGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATTGTAAAAACTCCTGAGGTTTCTGCTAGATTGACGTTTCCTATTTCTGTTAAACAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAATGTCGACGGGCCACCTGCACTGATTATATAATATCTTTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTGAGATCTAATTTTTTAGGAACAAAGTTCACCATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAAATTTCAAAGAGTCGTTCCTCTAGGCTCGTGGGCCTGAAACAAGTATCACCTAAAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAATTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTTCTATCGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCGAGCCGTATAGATTTTCTTCCATCATTGCGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATCGCTTCTGTGAAAAATTTTCAATTAGTAGCTTCACCTGAAAATGGAGTTGCCGGACCTGAACATGAGAAGATAATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACTATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGTCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 45.62 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASSIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4481950 4489175 + MELO3C006604.2.1 Cme06g00687 329836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00687 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cme06g00687 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Cme06g00687 387 Pfam Tub family 96 382 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cme06g00687 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cme06g00687 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cme06g00687 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cme06g00687 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cme06g00687 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Cme06g00687 387 PANTHER TUBBY-RELATED 1 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00687 K19600 TUB, TULP; tubby and related proteins - csv:101217713 783.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g00687 Cme11g01977 CCT
Cme06g00687 Cme11g01977 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02537 Cme-Chr1:33325526 Cme06g00687 Cme-Chr6:4481950 2.11E-14 dispersed
Cme06g00687 Cme-Chr6:4481950 Cme06g01306 Cme-Chr6:10907911 2.62E-152 dispersed
Cme03g00315 Cme-Chr3:3994795 Cme06g00687 Cme-Chr6:4481950 1.58E-153 transposed
Cme03g00617 Cme-Chr3:10036402 Cme06g00687 Cme-Chr6:4481950 9.17E-157 transposed
Cme07g01369 Cme-Chr7:19237423 Cme06g00687 Cme-Chr6:4481950 1.29E-131 transposed
Cme11g01977 Cme-Chr11:27746532 Cme06g00687 Cme-Chr6:4481950 1.87E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g00617 . 1 430 TUB Transcription Factor Family AT1G76900 72.5 1.1e-177 619.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT1G76900 68.9 4.3e-169 591.3
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.3e-168 589.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT1G76900 50.2 1.6e-115 413.3
Cme06g00687 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 51.4 2.9e-112 402.5
Cme06g01306 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 7.8e-102 367.1
Cme03g00315 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.3e-93 339.7
Cme03g00617 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 1.1e-92 336.7
Cme06g00687 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.9 9.3e-71 263.8
Cme07g01658 . 177 414 TUB Transcription Factor Family AT1G25280 56.2 9.3e-71 263.8
Cme04g00548 . 180 411 TUB Transcription Factor Family AT1G25280 55.3 8.7e-69 257.3
Cme08g00854 . 176 414 TUB Transcription Factor Family AT1G25280 51.3 6.5e-64 241.1
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.8 2.9e-97 352.1
Cme03g00617 . 112 430 TUB Transcription Factor Family AT5G18680 52.6 6.2e-84 307.8
Cme03g00315 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 3.1e-83 305.4
Cme06g01306 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.2e-82 303.5
Cme07g01658 . 115 414 TUB Transcription Factor Family AT5G18680 52.9 3.5e-79 292.0
Cme04g00548 . 116 411 TUB Transcription Factor Family AT5G18680 50.5 1.6e-76 283.1
Cme07g01369 . 115 383 TUB Transcription Factor Family AT5G18680 50.2 7.4e-69 257.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G18280 62.1 2.4e-144 508.8
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G18280 60.1 1.1e-136 483.4
Cme04g00548 . 1 411 TUB Transcription Factor Family AT2G18280 58.2 8.2e-124 440.7
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G18280 53.4 1.2e-119 426.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G18280 52.9 1.5e-117 419.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.3 1.3e-116 416.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.4e-112 403.3
Cme07g01369 . 52 383 TUB Transcription Factor Family AT2G18280 51.3 8.8e-94 340.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.5 1.5e-160 562.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G47900 55.5 2.9e-132 468.8
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G47900 56.7 1.2e-130 463.4
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G47900 55.7 7.9e-130 460.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G47900 55.9 7.2e-123 437.6
Cme04g00548 . 10 411 TUB Transcription Factor Family AT2G47900 55.7 1.5e-117 419.9
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G47900 51.4 1.1e-112 403.7
Cme07g01369 . 50 383 TUB Transcription Factor Family AT2G47900 51.4 8.5e-100 360.9
Cme11g01977 CCT,ECH 1 228 TUB Transcription Factor Family AT2G47900 56.5 1.6e-74 276.9
Cme01g02537 . 82 260 TUB Transcription Factor Family AT1G16070 52.7 4.0e-51 198.7
Cme03g00617 . 67 430 TUB Transcription Factor Family AT1G43640 70.8 9.8e-148 520.0
Cme06g01306 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 6.3e-147 517.3
Cme03g00315 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 2.0e-140 495.7
Cme06g00687 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.1e-105 379.4
Cme04g00548 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 3.4e-100 362.1
Cme07g01658 . 68 414 TUB Transcription Factor Family AT1G43640 50.3 7.1e-98 354.4
Cme08g00854 . 67 414 TUB Transcription Factor Family AT1G43640 50.1 4.8e-94 341.7
Cme04g00548 . 34 411 TUB Transcription Factor Family AT1G47270 63.9 5.4e-136 481.1
Cme07g01658 . 34 414 TUB Transcription Factor Family AT1G47270 58.3 4.0e-123 438.3
Cme08g00854 . 33 414 TUB Transcription Factor Family AT1G47270 56.3 2.4e-120 429.1
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G47270 52.3 2.6e-114 409.1
Cme03g00617 . 30 430 TUB Transcription Factor Family AT1G47270 52.2 8.4e-113 404.1
Cme03g00315 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.2e-112 402.1
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.2 2.4e-104 375.9
Cme07g01369 . 1 383 TUB Transcription Factor Family AT1G53320 71.9 3.9e-155 544.7
Cme07g01658 . 20 414 TUB Transcription Factor Family AT1G53320 51.4 2.0e-103 372.9
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.8 2.8e-97 352.1
Cme06g01306 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 5.7e-82 301.2
Cme03g00617 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 8.2e-81 297.4
Cme03g00315 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.4e-80 295.8
Cme07g01658 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 6.9e-80 294.3
Cme04g00548 . 120 411 TUB Transcription Factor Family AT3G06380 52.4 2.2e-78 289.3
Cme08g00854 . 118 414 TUB Transcription Factor Family AT3G06380 50.5 1.8e-75 279.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41455 PF01167 Tub 6.50E-111 CL0395 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00687 Cme_Chr06 FPKM 12.422235 16.405394 14.683244 14.17124 16.977526 13.117817 13.883172 7.951988 7.332712 7.856245