Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00687 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTCTTGGTTAGAATCGAGAGTTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTGGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATTGTAAAAACTCCTGAGGTTTCTGCTAGATTGACGTTTCCTATTTCTGTTAAACAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAATGTCGACGGGCCACCTGCACTGATTATATAATATCTTTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTGAGATCTAATTTTTTAGGAACAAAGTTCACCATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAAATTTCAAAGAGTCGTTCCTCTAGGCTCGTGGGCCTGAAACAAGTATCACCTAAAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAATTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTTCTATCGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCGAGCCGTATAGATTTTCTTCCATCATTGCGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATCGCTTCTGTGAAAAATTTTCAATTAGTAGCTTCACCTGAAAATGGAGTTGCCGGACCTGAACATGAGAAGATAATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACTATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGTCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 45.62 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASSIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4481950 4489175 + MELO3C006604.2.1 Cme06g00687 329836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00687 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cme06g00687 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Cme06g00687 387 Pfam Tub family 96 382 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cme06g00687 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cme06g00687 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cme06g00687 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cme06g00687 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cme06g00687 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cme06g00687 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Cme06g00687 387 PANTHER TUBBY-RELATED 1 387 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00687 Cme11g01977 CCT
Cme06g00687 Cme11g01977 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02537 Cme-Chr1:33325526 Cme06g00687 Cme-Chr6:4481950 2.11E-14 dispersed
Cme06g00687 Cme-Chr6:4481950 Cme06g01306 Cme-Chr6:10907911 2.62E-152 dispersed
Cme03g00315 Cme-Chr3:3994795 Cme06g00687 Cme-Chr6:4481950 1.58E-153 transposed
Cme03g00617 Cme-Chr3:10036402 Cme06g00687 Cme-Chr6:4481950 9.17E-157 transposed
Cme07g01369 Cme-Chr7:19237423 Cme06g00687 Cme-Chr6:4481950 1.29E-131 transposed
Cme11g01977 Cme-Chr11:27746532 Cme06g00687 Cme-Chr6:4481950 1.87E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41455 PF01167 Tub 6.50E-111 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00687 K19600 - csv:101217713 783.482