Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00688 ATGGGGTGTGTTTTTGGGCGAGAGGTGTCTGAGGATCCCGTCCAGAAAGAGGAGGAAGAGAGAAGACAGAAGGCAGAGGAGGAAATTAGGGTTTCTGTTAAGCCGGAGGTTGTTCAGGTTCAGGTTAACAATGCTCGTAATGGTGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGTTCGAGGCAGAGAAGTGAGCGGCGGCGACGGCCGAATCCGAGATCGAGTAATCCGCCAAAACATGTGCATGGGGAGCAAGTTGCCGCCGGTTGGCCGTCTTGGCTCTCTGCTGTCGCCGGGGAAGCTATCAACGGATGGATTCCTCGCCGTGCTGACTCTTTTGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGATACTTTGACAGGGAAGATTGTGGCTCTAAAGAAAGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAGATTCTCATCCTGCGGCGTTTGGATCATCCCAATGTTGTAAAACTCGAAGGTTTGGTGACGTCCCGGATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATTTGGCTGGACTTGCTGCGAGCCCCACGATCAAGTTTACAGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTCGAACACTGTCACAACCGCCACGTGCTGCATCGTGATATAAAGGGATCTAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCGGATTTTGGATTGGCTTCGGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTTCTTCTTGGAGCCACTGATTATGGTGTTGGCGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCCGGAAAGCCTATAATGCCCGGTCGCACAGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGATGAATACTGGAAAAAGTCAAGGTTGCCTCATGCAACCATATTCAGACCTCAACATTCATACAAGAGATGCATAACAGAGACATTTAAAGACTTCCCACCATCGTCTCTGCCACTTATCGAGACACTTCTTGCAATCGATCCAGCTGAACGCCAGACCGCCACTGCTGCTTTAAACAGTGAATTTTTCACTACCAAACCATATGCTTGTGAGCCTTCCAGCCTCCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAATTGCGGGATGAAGAAGCAAGAAGGCTAAGGGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAGAAATCACGAGCACGTGATCGAGCTGTTCGTGCAATACCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTTGATAGGCGGCGTCTCATAACACACGCGAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCTCTAGCATCTTCGCATCACATTGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACGATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTGACGGGCATTCATCAAAATCATCTAAGGACTTACGAAAAGATAAGAGTTCTGTTCGGATCTAA 1716 47.67 MGCVFGREVSEDPVQKEEEERRQKAEEEIRVSVKPEVVQVQVNNARNGGSRKEVEDDRGSRQRSERRRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPTIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSRLPHATIFRPQHSYKRCITETFKDFPPSSLPLIETLLAIDPAERQTATAALNSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLASSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRKKHTAGDGHSSKSSKDLRKDKSSVRI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4487424 4492115 - MELO3C006605.2.1 Cme06g00688 329837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00688 571 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00688 571 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Cme06g00688 571 MobiDBLite consensus disorder prediction 1 85 - -
Cme06g00688 571 MobiDBLite consensus disorder prediction 541 571 - -
Cme06g00688 571 PANTHER OS01G0367700 PROTEIN 57 553 - -
Cme06g00688 571 PANTHER CELL DIVISION PROTEIN KINASE 57 553 - -
Cme06g00688 571 MobiDBLite consensus disorder prediction 531 571 - -
Cme06g00688 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Cme06g00688 571 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00688 571 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00688 571 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Cme06g00688 571 MobiDBLite consensus disorder prediction 10 33 - -
Cme06g00688 571 MobiDBLite consensus disorder prediction 477 498 - -
Cme06g00688 571 MobiDBLite consensus disorder prediction 49 72 - -
Cme06g00688 571 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Cme06g00688 571 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Cme06g00688 571 CDD STKc_CDK9_like 113 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01749 Cme-Chr5:26533664 Cme06g00688 Cme-Chr6:4487424 0 dispersed
Cme06g00688 Cme-Chr6:4487424 Cme12g01566 Cme-Chr12:23051938 0 dispersed
Cme08g00466 Cme-Chr8:2847993 Cme06g00688 Cme-Chr6:4487424 1.09E-140 dispersed
Cme11g01211 Cme-Chr11:18333750 Cme06g00688 Cme-Chr6:4487424 0 dispersed
Cme06g00688 Cme-Chr6:4487424 Cme02g00153 Cme-Chr2:1140221 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64942 PF00069 Pkinase 1.30E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00688 K08819 - csv:101217952 1078.16