Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00702 ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAGTAATGGTGTCAAGGAAGCTACTAAGAAGGATACTGCTAAGGATGGCTCCACCGCTCAGTCTCACCATGTTACCAGAGTGAGCTCAGATAAATCGAAGTCACGGAGTGTATCTGATGCTAAGAAGGAGGCAACCGTTCAAAAGGATGGAACAACAGCACACATTGCAGCCCAAACATTTACATTTCGGGAGCTTGCAACAGCCACAAAGAACTTTAGATCAGAATGCTTGTTGGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCCTGGAGAGCACAGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTTTGGTGGAGGTTCTAATGCTAAGCCTGTTGCATCACCCGAATCTTGTTAACTTGATAGGCTATTGTGCTGATGGGGACCAACGTCTTCTTGTTTATGAGTTCATGCCGTTGGGTTCATTGGAAGATCATTTGCATGATCTTCCACCAGATAAGGAGCCCTTGGATTGGAATACCAGAATGAAGATTGCAGCTGGTGCTGCGAAAGGATTGGAATATTTGCATGACAAAGCAAACCCCCCTGTTATATATCGAGACTTGAAGTCATCTAATATTCTTCTTGACGAAGGCTACCATCCCAAGCTGTCAGATTTTGGTCTTGCAAAACTGGGTCCAGTTGGTGATAAGACTCATGTCTCAACGAGAGTGATGGGAACATATGGTTACTGTGCTCCAGAGTATGCCATGACTGGCCAACTCACTCTCAAATCGGATGTATATAGTTTTGGAGTTGTCTTTTTAGAACTTATCACAGGACGCAAGGCAATCGATAATACCAGAGGTCCAGGGGAGCACAATCTGGTTGCATGGGCTCGGCCACTTTTTAAAGATCGACGGAAGTTCCCTAAGATGGCTGATCCACTATTGCAAGGTCGATATCCCATGCGGGGCCTTTACCAGGCATTGGCAGTTGCAGCAATGTGCTTGCAGGAGCAGGCTGCAACAAGACCTCTAATTGGGGACGTTGTTACTGCTTTGACGTATTTAGCTTCCCAAACTTATGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATGGGTGGTTCTACTCCGCGAGCCCGAGATGAACGAAGAGGTTTTCCAGATGGACTGGATAGCCCTGATGAGCGTGGACGAGGACGTGGTTCCCCATCGAACTACAGAAATTCACCTGATTACCGAAAGAAAGACTTCCATAGGGAATTGAGTTGTGGAGGTACAGAGCTGAGCAAAATTGACACTGGAGGTGGATCTGGTCGAAAATGGGGATTGGATGAGCTAGAACGACAAGAATCTCTGCGAGACAGTCCTGTATATGCTGGGAGAGCAAGGGAAACGCCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAGAGAAAGAGAGCAAATGCGCAAGGCAGCTTTGACGGTTCACAAGAATGA 1542 47.02 MGGCFPCFGSSDEDGSNGVKEATKKDTAKDGSTAQSHHVTRVSSDKSKSRSVSDAKKEATVQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMGGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDFHRELSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYAGRARETPRNRDLNRERAVAEAKVWGENWRERKRANAQGSFDGSQE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4544201 4549406 - MELO3C006619.2.1 Cme06g00702 329851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00702 513 Pfam Protein kinase domain 91 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00702 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Cme06g00702 513 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Cme06g00702 513 Gene3D Transferase(Phosphotransferase) domain 1 164 382 - -
Cme06g00702 513 MobiDBLite consensus disorder prediction 418 434 - -
Cme06g00702 513 CDD STKc_IRAK 93 362 - -
Cme06g00702 513 MobiDBLite consensus disorder prediction 373 482 - -
Cme06g00702 513 MobiDBLite consensus disorder prediction 1 60 - -
Cme06g00702 513 PANTHER OS07G0668900 PROTEIN 1 507 - -
Cme06g00702 513 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 507 - -
Cme06g00702 513 SUPERFAMILY Protein kinase-like (PK-like) 70 361 IPR011009 -
Cme06g00702 513 MobiDBLite consensus disorder prediction 385 410 - -
Cme06g00702 513 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00702 513 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00702 513 Gene3D Phosphorylase Kinase; domain 1 56 163 - -
Cme06g00702 513 MobiDBLite consensus disorder prediction 41 60 - -
Cme06g00702 513 MobiDBLite consensus disorder prediction 17 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01340 Cme-Chr3:22943619 Cme06g00702 Cme-Chr6:4544201 2.47E-171 dispersed
Cme04g02570 Cme-Chr4:31786326 Cme06g00702 Cme-Chr6:4544201 0 dispersed
Cme06g00702 Cme-Chr6:4544201 Cme10g00828 Cme-Chr10:5472250 0 dispersed
Cme01g01744 Cme-Chr1:24422995 Cme06g00702 Cme-Chr6:4544201 5.56E-176 transposed
Cme02g00954 Cme-Chr2:13817271 Cme06g00702 Cme-Chr6:4544201 4.01E-161 transposed
Cme06g02265 Cme-Chr6:29655336 Cme06g00702 Cme-Chr6:4544201 0 transposed
Cme11g02350 Cme-Chr11:30503519 Cme06g00702 Cme-Chr6:4544201 0 transposed
Cme04g01794 Cme-Chr4:25628060 Cme06g00702 Cme-Chr6:4544201 5.52E-83 transposed
Cme08g00269 Cme-Chr8:1741204 Cme06g00702 Cme-Chr6:4544201 2.43E-45 transposed
Cme02g00113 Cme-Chr2:849433 Cme06g00702 Cme-Chr6:4544201 3.20E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64943 PF00069 Pkinase 7.80E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00702 - - csv:101207561 1032.71