Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00709 AGAAGAAGAAGAAGAAGAAGGGGGCAAAAGCAAAAACCCAGAAAATCCAAAAAGAAAGAAAGCGCTTCTTCTTCTTCATCTTCTTCCTCTCTCAAATACGATCTCCCCACATGTGATCGGACCTTCCATTTCCTTCTTCTTCTTCTTCTTCTTTCAACCCATTTCCTCTTCTTCACTCATTCTACGGCAGCTGGCCGTACCATGAAGCCCTACGCTCACTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGTTTCTGGACCTGATACAACATCTCATGGAGACTCCCTTTGGCCTTTGGGATCCAGGGATAGGGATTCCTACCCTGAACGTCCTGATGAAGCTGATTGTATATATTACCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTTAATCATCCCCGTGAACGTTCCCCGGCTTTAGGAGGTTCGAGACTTGGTGGAAGAGAGTATCCAGAGCGAATAGGGCAGCCTGTTTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCGTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTCAGTCCCGTGTCACTGAATTTCTATGGCTATCCACTAAGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAAGTTACACCTATAGCAGGTCAAGTGCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCCTCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCGAGGCCTTCATTGCTTTCAAGCCCGTATGTCCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCGGGCGTTGTTCAGTTCCCAAGTTGGAGTCCTTATCCTGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTCTATGGTATGGCACATGTTTCGCCTTCTGCATCTGCCTTTGCAGGATCTTATCAGCCCATGCCATCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAATGTCAATATTATATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACTTCGAGGCCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCCGCGTGCAAATTTGACCACTCAATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCTGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGCGGATTGGTTGGTTCAACTACATCAAGGACAGAAATGCATTCTCTTTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCGTCAGTGGGGAGTACCTCCAGCAGCACCAGTGCGGAGGGTCGTACTTGA 1647 48.27 RRRRRRRGQKQKPRKSKKKESASSSSSSSSLKYDLPTCDRTFHFLLLLLLLSTHFLFFTHSTAAGRTMKPYAHSIEGSHSDPSPEWTVSGPDTTSHGDSLWPLGSRDRDSYPERPDEADCIYYLRTGFCGYGSRCRFNHPRERSPALGGSRLGGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPIAGQVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASAFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSLSSVQRSSQSSGPSVGSTSSSTSAEGRT 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4618750 4622973 - MELO3C006627.2.1 Cme06g00709 329858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00709 548 ProSiteProfiles Zinc finger C3H1-type profile. 416 444 IPR000571 GO:0046872
Cme06g00709 548 Gene3D - 191 239 - -
Cme06g00709 548 SUPERFAMILY CCCH zinc finger 420 447 IPR036855 GO:0046872
Cme06g00709 548 MobiDBLite consensus disorder prediction 74 112 - -
Cme06g00709 548 SUPERFAMILY CCCH zinc finger 162 190 IPR036855 GO:0046872
Cme06g00709 548 MobiDBLite consensus disorder prediction 1 32 - -
Cme06g00709 548 Gene3D - 110 190 - -
Cme06g00709 548 Gene3D - 359 405 - -
Cme06g00709 548 MobiDBLite consensus disorder prediction 1 17 - -
Cme06g00709 548 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Cme06g00709 548 MobiDBLite consensus disorder prediction 492 548 - -
Cme06g00709 548 ProSiteProfiles Zinc finger C3H1-type profile. 370 398 IPR000571 GO:0046872
Cme06g00709 548 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 233 IPR000571 GO:0046872
Cme06g00709 548 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 116 141 IPR000571 GO:0046872
Cme06g00709 548 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 187 IPR000571 GO:0046872
Cme06g00709 548 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 419 443 IPR000571 GO:0046872
Cme06g00709 548 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 372 397 IPR000571 GO:0046872
Cme06g00709 548 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Cme06g00709 548 Gene3D - 416 463 - -
Cme06g00709 548 SUPERFAMILY CCCH zinc finger 208 234 IPR036855 GO:0046872
Cme06g00709 548 PANTHER PROTEIN PHOSPHATASE RELATED 81 531 - -
Cme06g00709 548 SMART c3hfinal6 114 141 IPR000571 GO:0046872
Cme06g00709 548 SMART c3hfinal6 416 443 IPR000571 GO:0046872
Cme06g00709 548 SMART c3hfinal6 160 187 IPR000571 GO:0046872
Cme06g00709 548 SMART c3hfinal6 370 397 IPR000571 GO:0046872
Cme06g00709 548 SMART c3hfinal6 206 233 IPR000571 GO:0046872
Cme06g00709 548 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 81 531 - -
Cme06g00709 548 ProSiteProfiles Zinc finger C3H1-type profile. 114 142 IPR000571 GO:0046872
Cme06g00709 548 SUPERFAMILY CCCH zinc finger 374 397 IPR036855 GO:0046872
Cme06g00709 548 MobiDBLite consensus disorder prediction 471 548 - -
Cme06g00709 548 MobiDBLite consensus disorder prediction 347 373 - -
Cme06g00709 548 MobiDBLite consensus disorder prediction 347 367 - -
Cme06g00709 548 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Cme06g00709 548 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00920 Cme-Chr2:12823681 Cme06g00709 Cme-Chr6:4618750 5.41E-102 dispersed
Cme06g00709 Cme-Chr6:4618750 Cme11g01510 Cme-Chr11:22300788 2.43E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41458 PF00642 zf-CCCH 1.60E-07 CL0537 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00709 - - csv:101221033 890.182