Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00729 ATGCTTCAAGAAGCTTCAACAAAACCCGAGGGAGAACTTGAAGTTAGCTTCGGTTATAAATGCAATGGCAACATAGGTGAAATTCATGATGTTTCTGACAAGTTGGAGATCCAGTCTGGACTTCAAAGGATCAGCAGTTTCTCTTGCTTATCTGGGGCTGCCTTGAGTGCAAATGCCACCCTAGCAAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATTCTGCCAACCTGGGACTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCGCCTAATCTTTCAAGGTTGGATATACTGTCAACGTCTTTACAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCTACCCCGACCTCTGATTATGATTCATACTTGTTGAAATCCATGAGTTCTCCATCTGGAGGTGAAGGTTTCCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCTGCTGATTTTCTTGCTGGCACATTGTATGAAACCATCGTATTTTATTTTAATCTACTAGATTGGGAATCCAAGAATGAAACCTCTGACGGTTTAGACATGGATAGTGCACATCTTCTTGATGATAGTAACATTACTCAAGGAAGATTTTCTCCTTTGGGAAACAATAGTAAAATTGCTTCAGATATCCACAATGTGTTAGAGAACCATTCATATGCCAAAGCAGGAATGACAGACTACCCTCTAAGGTATGGGGTGCTCGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAACGATTTTCTGCACATGGTAGAACAGGAAATGGAGGACCGCCCTGATTTAGTTTCTGTTGGGTCATGTGTTTTAGTTGTTCTTCTTTATGGGAAGGATTTGTACACGCTAAATTTGGGTGATAGCAGAGCAGTACTAGCTACCCTTGACGAGGGTTCTATGAGACGAAATAGGGGTCTGAAAGCCGTCCAGCTCACTGAGAGTCACACTGTGGATAATGAACTTGAAAGAGAACAGTTACAACATGATCATCCTGATGATCCGACAATAATTGTTGGTGGCAAAGTCAAAGGAAAATTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGGACAAAGTTGATGTGGTATCAATGCTAAAAATGAAAAAATTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCGGCATTGTCTATCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTTTTTGGCAATGAGGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATTTTTACTGGAGCAGCTTCTGTTGAAAGCAGCTAATTGTGCAGGTTTTAGCAAGGAAGAGTTGATTACCATTCCAGCCGGTAGGAGAAGGAAGTATCATGATGATGTAACTGTTATCGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCAACTAGCATGTAA 1599 41.46 MLQEASTKPEGELEVSFGYKCNGNIGEIHDVSDKLEIQSGLQRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPNLSRLDILSTSLQSSLSNLSCSPSTPTSDYDSYLLKSMSSPSGGEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFYFNLLDWESKNETSDGLDMDSAHLLDDSNITQGRFSPLGNNSKIASDIHNVLENHSYAKAGMTDYPLRYGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLYGKDLYTLNLGDSRAVLATLDEGSMRRNRGLKAVQLTESHTVDNELEREQLQHDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTDKVDVVSMLKMKKFNDALMGILRVRNLISPPYISTQPALSIHRISKSDCFVIVGSDGLFDFFGNEEAVNLVHSYILSNPTGDPAKFLLEQLLLKAANCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4815748 4821154 - MELO3C006661.2.1 Cme06g00729 329878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00729 532 Gene3D - 120 528 IPR036457 -
Cme06g00729 532 ProSiteProfiles PPM-type phosphatase domain profile. 139 519 IPR001932 -
Cme06g00729 532 SMART PP2C_4 130 517 IPR001932 -
Cme06g00729 532 CDD PP2Cc 152 519 IPR001932 -
Cme06g00729 532 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 3 531 - -
Cme06g00729 532 Pfam Protein phosphatase 2C 271 470 IPR001932 -
Cme06g00729 532 PANTHER PROTEIN PHOSPHATASE 2C 3 531 IPR015655 GO:0004722|GO:0006470
Cme06g00729 532 SUPERFAMILY PP2C-like 153 520 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00729 Cme-Chr6:4815748 Cme06g02487 Cme-Chr6:31828616 6.78E-15 dispersed
Cme06g00729 Cme-Chr6:4815748 Cme08g02405 Cme-Chr8:30953251 2.31E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00729 - - csv:101202885 969.533