Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00752 ATGTCTGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGTGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCAGTGGCAGTCGGGGTCAATCGTAAAAACCCCACCACCGACAGCAGTGGTGGCGACGGTGCCACAGCCGAGATTTCGACCTCCACCAAAGCAGTCCAGGCTCTCTGTCAGCCCACTGATTACAAAGAAACCTGCGAGAAAGCTCTGTCTGAGGCCGGAACCAACACCAGCGACCCACGTGAGCTAATCAAATCAGGATTCCATGTCGCCGTCAACGAAATCAAATGGGCCATCGGAAATTCCACCCAATTGAAAGAAGCCGCCTCCGACCCAATGGCTAAACAAGCTCTTGACGCTTGTGGTGAGCTTATGGATTATGCAATTGACGATCTCGTAATTTCCTTCGACAGAATCACTGACAATTTCGACGTCCAGAAACTCAATGATTACGTCGAAGATCTTAAGATTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCATAGACGGCTTCGAAAATGTCACCGGCGATACCGGGGAAAAGATGGCGAAATTGTTGAAAACGTCGAAAGAATTGACCAGTAATGGTCTTGATATGGTGAGTGAAGTTAATTCCATTATGACCTCTTTTGGACTCCCAGCAGTTGGACGACGGTTATTGACGGAGGAATCCAATCAACAAGAGGAAGAACCGTCGTGGGTCGGCGACAGACGGGGGCTTCTTCAAGCCACCGGCGCCACCGTCAAGGCGGATGTCGTGGTGGCGAAAGACGGAAGTGGAAAGTACAAAACTGTGACTGAAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTCATGTTAAGGCAGGGGTTTATCAAGAACAAGTAATGGTAGACAAAAGTATGACTTGGGTGATGATGATCGGAGATGGTCCGACTAAAACTAAGATTACCGCCGGCAAGAACTACGTCGATGGAACACCCACCTTCAAAACCGCCACCGTTTCTGTGATTGGAAGCAACTTCATTGCGAAGGACATCGGGTTCGAGAACTCTGCCGGAGCAGCAAAGCATCAGGCGGTGGCACTTCGAGTTCAATCCGATATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTATACACACGCTCACCGTCAATTCTACCGAGACTGCACCATCACCGGAACCATCGATTTCATCTTCGGAAACGCCGCCGCTGTCTTCCAAAACTGCAAGATTCTAGTGAGGAAGCCAATGGATAATCAACAATGCATCGTCACCGCGCAGGGCCGAACTCAACGGAAAGAGCCGACCGCCATAATCTTGCAAAATTGCGCCATTTCCTCAGACCCTACCTTCTTCCCGGTCCGCCACATCAACAAGGCTTACCTCGGCCGGCCATGGAAGCAATATTCAAGAACAATCATAATGCAATGCCAAATTGATGACTTGATTCAACCTGAAGGGTGGCTTCCATGGATGGGAGATTTTGCTTTGCATACTCTGTTTTATGCAGAGATCAATAACAGGGGACCGGGAGCAGCTACGGATAAACGTGTGAAGTGGAAGGGAATTAAGAAAATCACTCCGCAACACGCCTTAGATTTCACTGTTGGGAGATTTATTCGTGGAGATCCCTGGATCAAGCCCACCGGAGTTCCGTACAGTTCCGGCATGATGGCTGTATAA 1713 48.39 MSDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKNPTTDSSGGDGATAEISTSTKAVQALCQPTDYKETCEKALSEAGTNTSDPRELIKSGFHVAVNEIKWAIGNSTQLKEAASDPMAKQALDACGELMDYAIDDLVISFDRITDNFDVQKLNDYVEDLKIWLSGALTYQETCIDGFENVTGDTGEKMAKLLKTSKELTSNGLDMVSEVNSIMTSFGLPAVGRRLLTEESNQQEEEPSWVGDRRGLLQATGATVKADVVVAKDGSGKYKTVTEALNDVPKKSNKTFVIHVKAGVYQEQVMVDKSMTWVMMIGDGPTKTKITAGKNYVDGTPTFKTATVSVIGSNFIAKDIGFENSAGAAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAAVFQNCKILVRKPMDNQQCIVTAQGRTQRKEPTAIILQNCAISSDPTFFPVRHINKAYLGRPWKQYSRTIIMQCQIDDLIQPEGWLPWMGDFALHTLFYAEINNRGPGAATDKRVKWKGIKKITPQHALDFTVGRFIRGDPWIKPTGVPYSSGMMAV 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4959491 4961365 - MELO3C006683.2.1 Cme06g00752 329901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00752 570 PANTHER PECTINESTERASE 12 567 - -
Cme06g00752 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 207 IPR035513 -
Cme06g00752 570 Pfam Pectinesterase 257 553 IPR000070 GO:0030599|GO:0042545
Cme06g00752 570 PANTHER PECTINESTERASE 12 567 - -
Cme06g00752 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 210 IPR035513 -
Cme06g00752 570 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Cme06g00752 570 CDD PMEI-like_3 59 208 - -
Cme06g00752 570 SMART PMEI_2 52 205 IPR006501 GO:0004857
Cme06g00752 570 Pfam Plant invertase/pectin methylesterase inhibitor 56 205 IPR006501 GO:0004857
Cme06g00752 570 SUPERFAMILY Pectin lyase-like 252 566 IPR011050 -
Cme06g00752 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 204 IPR006501 GO:0004857
Cme06g00752 570 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Cme06g00752 570 Gene3D - 251 567 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00752 Cme11g02031 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00752 Cme-Chr6:4959491 Cme10g01634 Cme-Chr10:22079261 1.49E-170 dispersed
Cme11g02031 Cme-Chr11:28124390 Cme06g00752 Cme-Chr6:4959491 0 wgd
Cme02g00063 Cme-Chr2:557265 Cme06g00752 Cme-Chr6:4959491 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00752 K01051 - csv:101212686 1028.85