Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00764 ATGTCTACGGCCAGTTCCAGTTCTGTAAGGAAAGCTAGTGAAGCTGTTCCCGACCAGTTTCCAGCCGGCCTTCGTGTTTTGGTTGTGGATGATGATCCAACTTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAATCGAGCGGAGGATGCACTCTCTCTACTCAGGCAGTACAAAAATGGGTTCGATATCGTTTTGAGTGATGTTCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTAGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTTGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAAACTTGTGTTGACGATGTAGATCGGCAGCAAAAAACAAATGAAGATGCAGATTATTCATCCTCTGCTAATGAAGGTAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGAAGATCCAGAGGAGAGGGATGATTCATCAACCTTAAAGAAACCGAGGGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTCAATCAACTAGGAATTGATAAGGCTGTTCCGAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGGCTAAGTGGAATCGCACAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGGCCCGCCACTGAACGGCCTTGATTTACAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCTGGGATGCCTATGCCTCTTGTCGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTTGGTGATGGGCAGCAGCCGCATTTGAATGGTAGTAAACCTATGAATCTACTTCATGGAATTCCGACAACTATGGAGCCAAAACAACTTGCTAATCTCCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAGGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCACAGATCCTTAACGAAAGTACCTCAACTAGTGTAACAAGGCTTCCACAAACAATGCAGCCCTCAATTTTGCCGAATGGGACTACTAGTGCAGTTTTAGCAAGGAATGAATTTGGTAATAACAACAGAGGTGGAGGATACAATCTAGTTTCACCAGCTTCAACAATGTTAAATTTCCCTTTGAACCAAACTGCAGAATTGCCTGGTAACAGTTTTCCGCTTCAAAGTACCCCAGGAATGTCAAGCATCGTACCAAAGGGAAGATTCCCAGACGAGGTTAACTCGGACATTAAAGGATCTGAAGGGTTTGTGCCAAGCTACGATATGTTTAGGGATCTTCATCCCCAGAAACCCCATGATTGGGACTTGCAGCACGTAGGCGTGACCTTCGAAACATCTCAAGGTAGTCTCGACATTCCGCCCTCTGCTTTTTCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAATAGGAACACATCTACAGCAGGCAAGGCCATGTTCTTGTTGGAAGGAGGAAGTGACAATGGGAATGCACAAAGTATGGGGCAACAACTCAACCCTATTTTCGTCGATGGTTCGGTGAGAGTTAAATCTGAAAGAGCTTCTGATATTAGCAGTCAAACAGACCTTTTCTCTGAACCCTTTGGTCAGGAGGACCTAATGAGTTCACTTTTTAAGCAGCAACAAGGAAGCATTGCAACAGCTGAAAGCGAACTGGAATGGTTGTTTCATCATAATACTCCTGTTTAG 1983 44.18 MSTASSSSVRKASEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCNRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQTCVDDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGIAQHQSNLNNTFMSAQDAFGPPLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGGQSSSQLMQTPQPQARAQILNESTSTSVTRLPQTMQPSILPNGTTSAVLARNEFGNNNRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVPSYDMFRDLHPQKPHDWDLQHVGVTFETSQGSLDIPPSAFSHQGYASSQQNGQNRNTSTAGKAMFLLEGGSDNGNAQSMGQQLNPIFVDGSVRVKSERASDISSQTDLFSEPFGQEDLMSSLFKQQQGSIATAESELEWLFHHNTPV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5045134 5049511 + MELO3C006693.2.1 Cme06g00764 329913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00764 660 SUPERFAMILY CheY-like 23 147 IPR011006 -
Cme06g00764 660 Gene3D - 200 262 - -
Cme06g00764 660 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Cme06g00764 660 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Cme06g00764 660 PIRSF RR_ARR_type-B 5 651 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme06g00764 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Cme06g00764 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 631 IPR045279 GO:0009736
Cme06g00764 660 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cme06g00764 660 MobiDBLite consensus disorder prediction 158 201 - -
Cme06g00764 660 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Cme06g00764 660 CDD REC_typeB_ARR-like 26 140 - -
Cme06g00764 660 MobiDBLite consensus disorder prediction 179 201 - -
Cme06g00764 660 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cme06g00764 660 Gene3D - 24 160 - -
Cme06g00764 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 631 - -
Cme06g00764 660 SMART REC_2 24 136 IPR001789 GO:0000160
Cme06g00764 660 MobiDBLite consensus disorder prediction 551 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01081 Cme-Chr2:15840669 Cme06g00764 Cme-Chr6:5045134 2.70E-109 dispersed
Cme06g00764 Cme-Chr6:5045134 Cme07g00108 Cme-Chr7:673597 2.01E-110 dispersed
Cme10g00222 Cme-Chr10:1489765 Cme06g00764 Cme-Chr6:5045134 2.14E-17 dispersed
Cme03g02198 Cme-Chr3:28932154 Cme06g00764 Cme-Chr6:5045134 5.97E-97 transposed
Cme06g00963 Cme-Chr6:6843146 Cme06g00764 Cme-Chr6:5045134 2.10E-49 transposed
Cme12g01975 Cme-Chr12:25560215 Cme06g00764 Cme-Chr6:5045134 1.42E-18 transposed
Cme11g02055 Cme-Chr11:28293377 Cme06g00764 Cme-Chr6:5045134 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41466 PF00072 Response_reg 2.10E-22 CL0304 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00764 - K14491 csv:101209013 1274.61