Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00781 ATGACTAATATGGCTCTTCGAAAGTTTGTTTGTGGTTCTACACCTTCAATTAACCTGAAACATTCAAGTTTTCCCATTAAGTTGCACGAACAAACTCAATTTGAAGAACCTGAGACTAATCAGACGTTGGAGCCTGATGTAGAAATTGACCCCAGAGAAGTATATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCTTAGAACTTGTGGGCTACTATGGGATGAGCTTTTTGAACACCAGCTTTTACCCCGACGATATCATGCATGGTATTCAAGAAGTGGGGTGCATAGTGGCCATGAAAATGACGATGGCTTGTCATTTCCATTAAGTTACCAACACTTGGTGGAGAGGTATCCCCATGTCGATAAGAATCACCTGATAAAACTTTTGAAGCAATTGATACTTAACAAGGCCCCTCCATCTAGAGGTATGAGTGGTGGAATTGCTCCAAATGCTGCTGATGTGCCTACATTATTGGGAACGGGCACATTTTCACTTTTAAGCTATGATAAACATGAAGGAGTTGGCAAACCAAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCGCCTTCTGTACGTGCAGCATGTTATGCAATTGCTAAGCCATCAACAATGGTTCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATAGGAATGCTGTCTATTGTGCAATTTTTGATCGAATGGGAAGGTACGTTATAACTGGGTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCAGAGGACATGAGGGTGATATCACTGACCTTGCTGTTAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGTTTGCCTGATGGGCTACCGATTTCAGTCTTACGAGGACATACCGGTGCTGTTACTGCAATTGCCTTTAGTCCTAGAGCTGCATATCAGCTTCTTTCATCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAGTGCTCCTCGGATTTATGTTCCAAAACCTTTGGACTCTGTGACTGCTAGAAATGGTGGCTCTTCTGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCATGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTCTGGCAAGGGTTTGGAGTGCCTGTAAAGGAAACAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTAGCTGGCCACGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCTGTAGCATCAAGATTTACAACTACCGACGTTGTGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTTACTTATGACAATATAGTTACTTGTTCTCGTGATGGAAGTGCAATTATTTGGGTTCCAAGATCACGGAGGTCACATGGGAAGGTTGGTCGCTGGACTCGTGCATACCATTTAAAAGTGCCGCCTCCACCCATGCCCCCGCAACCTGCCCGAGGTGGCCCTCGTCAGAGGATTCTTCCTACCCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCGCTTTGTCCTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTTCACTCTTTGACAGGTCATACTGAATCTACATATGTACTTGATGTTCATCCTTTCAATCCGAGGATTGCTATGAGTGCTGGATATGATGGAAAGACGATAGTTTGGGATATTTGGGAAGGCACACCAATACGGATATATGAAATTTCTCACTTCAAACTGGTTGATGGGAAGTTTTCATCAGACGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAGGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTCCGGCAATGTAGTTGACCAGGAAACCCAACTCAGTACTTACAGAAGGAATTTGCAAGATCTTCTTTCCGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGACGTTTAGGTGCTATGGGTGTTGAATGGCGTCCCTCTTCTCTAAAACTTTCTGTTGGGCCCGACTTCAATCTCGACCCTGATTACCAATTGCTGCCATTGGCAGACTTGGACATGGTTGAACCATTGCCTGACATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGCGAGGATACTGATTCAGAATACAACGTCACCGAGGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCGAATTGCTCAACCGATCCAGAATGCAGCTCTGAAGACACAGGGATTGATGATGCTCCTGCTGATGGTCTTCGAAGATCAAAAAGGAAAAAACAGAAGGCAGACATGGAAGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGAAATATGGATGAGTATGAAGGTGATGCTGTCAGGAGTTCCAGGAATCGGAAGTCAAAGTCTGGCCATAAGCCTTCCAAAAAGAAATCAGCATCCAAGTCCTTAAGACCTCAAAGAGCAGCTGCACGTAATGCTCGCAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGAAGAATATGAGTCAGGAGGTGATTGCTCAGAAAGTGAATCTACATTAGAAGATTCAGACATTGAGAGCGATGAATATGAAAGGTCATTGCAAAACAGAATTAAGCATTCAGAAGGGAAAGAAGTATTCCTAGATGGAACCGAGGAGATAACAAAATCTCTTGATGTTCCTGAATCTCGTGTAGATGCTGGAAAGAGAAGGAAGCTGATCGTTAAATTCTCCGTTAAGAATCTAAATAAGGGTGATCCTCCTCCAAACACAGCACTTACTTGTTCCAACACGGCTGATGTGCCTAGCTCTTCATCAAGATCACCAAAGGAAGTTATTGAAACCAGTCAGAATCTCGTGAGATCTGAGAGACAATTTGTAAATATTGATGGAAATTCTGATCTGACTGAGGTCTACACAAATGGGAACATAAGATGGGGAGGGTCCAGGGTTCGTTCATCCAAGCGCATTAGATTTGGGGATACCATGCCTTCTGACGCATATGCAGTATCTAGTTCACTTCCCGATGGCGATCATAATGAAAATGAGAATGCAGTCCATGAATATTTAGAACGAGAAAATCATTTTGGTGCACCATCTCCCCATGCAAAGGTAGAGAATTTTTGTTCAGATGAAATGGACACAGTATCTCCCACAAATTTGAAGGAGGACGATGACAATGCTTCTGGGCATTCTCAGGAGATGGTTAATGGTGGTGACCTTAAATGCGTTGGCACCAGCAAGTCATGTGACCATGATGATTCAAATAATTTGAATTTCATGTTTTCTTCTGACGCAACCACCTCATCAATACAAAATGGGACTCCTGCTCCTGAGAAAACTGAAAATACTGCACCAATGCGTCAAAAGATAAGGTTCAAGAGTATTTCCTTGGATCCTGAACATTCTTTGAAGCATAAAATAGAATCCTTAGATGAAAGCTCGAAGAATGATGAATACAATACAGTATCTGGAAGCCCTCAGCATCCAAATGGGCTGCAGGATAGTGTCATGAATGAAACTTATTCTGATCTTAGAAATAATTGCCCACAAGATATGGACATCGCAATTGATGAAAAGCCAGTATCAACCTTATGCAAATCAGAGTTGCAAGCAGTTGAGACAAACAAAATGTACACTGCAGTTTATACAAGATCCAAGTCAAACAAAGGAAAGAGCAATATAGATAGCAATGGTTGTGCCTCAGGAGAAAATGCCTTGGGCAACAGTAGTTTACCCGCTGATGCAGATAGTCACAAAATTATGGTCCGTAAGGCACGGTCTATAAGGTTTAAGGAGTCCTCGTATGATCTAAATAATGTGGGTGATGATCTAAAGTCAGACGAAGATCAAGAACTTGAACAGAGATCAAGACGCTCTGGAAATTCTTCTGCAGGTAGATCCCATATTCCAAGTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGATCCACTCGAAACAGAAGGGGTACTTTGATTCAAGACATAAATCCAGTAGACAGAAGAAAATCAGTTCAGTATGCTAGAAAAGGATCGTGGTTAATGATGCCTGCACATGAGGGTGGCTCCAGATATATTCCCCAACTCGGAGATGAAGTTGCGTATCTGAGGCAGGGCCATCAGGAATACATAGAATACTGTTGTGCAAATTACTGCAACACAAAAGACATGGGACCTTGGACCTCAAACCGAGGAACCATACGAGCTGTTGAGTTCTGCAAGGTTGTGGAGCTCGTTTATTCAACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCATCTTCCGATGTATTCCTTCAATTGTTCAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCTGACTTCTTAGTTGAAAAATCTCGGTTCGAAGCAGCAATGCAGAGGAATTGGACGTTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGACGTTGGAGTAGATGGTAGTTGGTGGGATGGTCGAATTATCTCTGTTCAGGCAAAATCTTCAGAGTTCCCAGAAAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCTGAACCACATTTACATAGTCCTTGGGAGCTCTATGATACTATTATTCAGTGGGAACAGCCTCGAATAGATGATGAAACCAAATCAAAGTTGTTAATGGCCATTGATAAATTAATGTCACCCTCTATGCAGGGTCGTTATGGGATACAAGATTTGATGATTCTCTCACGGAAGACGCAATACAAGAACAGGTTTCCTGTGCCATTGTGCCTTGAGATAATCCAGGAAAGGTTACAGAATGATTACTACCGAAGCCTGGAAGCTTTGAAGCATGACTTCATGGTAATGTTATCGAATTTCGAGTCCTTCGTGGCAAAGAATGAAGACATGTCAAAGAAAATTAGACGATTGTCGGACTGGTTTGATCGCAACATATCACCTCTATAG 5184 42.4 MTNMALRKFVCGSTPSINLKHSSFPIKLHEQTQFEEPETNQTLEPDVEIDPREVYFLIMHFLSSGPCLRTCGLLWDELFEHQLLPRRYHAWYSRSGVHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVGKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPKPLDSVTARNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVVKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMVEPLPDIVDAMDWGPENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDAVRSSRNRKSKSGHKPSKKKSASKSLRPQRAAARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQNRIKHSEGKEVFLDGTEEITKSLDVPESRVDAGKRRKLIVKFSVKNLNKGDPPPNTALTCSNTADVPSSSSRSPKEVIETSQNLVRSERQFVNIDGNSDLTEVYTNGNIRWGGSRVRSSKRIRFGDTMPSDAYAVSSSLPDGDHNENENAVHEYLERENHFGAPSPHAKVENFCSDEMDTVSPTNLKEDDDNASGHSQEMVNGGDLKCVGTSKSCDHDDSNNLNFMFSSDATTSSIQNGTPAPEKTENTAPMRQKIRFKSISLDPEHSLKHKIESLDESSKNDEYNTVSGSPQHPNGLQDSVMNETYSDLRNNCPQDMDIAIDEKPVSTLCKSELQAVETNKMYTAVYTRSKSNKGKSNIDSNGCASGENALGNSSLPADADSHKIMVRKARSIRFKESSYDLNNVGDDLKSDEDQELEQRSRRSGNSSAGRSHIPSEEWGSSSRMTVGSRSTRNRRGTLIQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIEYCCANYCNTKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPSSDVFLQLFKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIISVQAKSSEFPESPWERYTIKYRSDPAEPHLHSPWELYDTIIQWEQPRIDDETKSKLLMAIDKLMSPSMQGRYGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5156634 5179582 - MELO3C006708.2.1 Cme06g00781 329930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00781 1727 CDD Bromo_WDR9_I_like 1603 1725 - -
Cme06g00781 1727 SMART bromo_6 1623 1726 IPR001487 GO:0005515
Cme06g00781 1727 MobiDBLite consensus disorder prediction 869 886 - -
Cme06g00781 1727 MobiDBLite consensus disorder prediction 1366 1403 - -
Cme06g00781 1727 SUPERFAMILY Bromodomain 1659 1725 IPR036427 GO:0005515
Cme06g00781 1727 MobiDBLite consensus disorder prediction 776 945 - -
Cme06g00781 1727 SUPERFAMILY WD40 repeat-like 232 655 IPR036322 GO:0005515
Cme06g00781 1727 MobiDBLite consensus disorder prediction 915 936 - -
Cme06g00781 1727 Pfam WD domain, G-beta repeat 573 612 IPR001680 GO:0005515
Cme06g00781 1727 Pfam WD domain, G-beta repeat 393 421 IPR001680 GO:0005515
Cme06g00781 1727 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Cme06g00781 1727 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Cme06g00781 1727 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Cme06g00781 1727 MobiDBLite consensus disorder prediction 1346 1365 - -
Cme06g00781 1727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Cme06g00781 1727 MobiDBLite consensus disorder prediction 790 814 - -
Cme06g00781 1727 Pfam Bromodomain 1658 1712 IPR001487 GO:0005515
Cme06g00781 1727 Gene3D - 389 460 IPR015943 GO:0005515
Cme06g00781 1727 Gene3D - 1650 1727 IPR036427 GO:0005515
Cme06g00781 1727 SMART WD40_4 318 358 IPR001680 GO:0005515
Cme06g00781 1727 SMART WD40_4 383 421 IPR001680 GO:0005515
Cme06g00781 1727 SMART WD40_4 572 612 IPR001680 GO:0005515
Cme06g00781 1727 SMART WD40_4 276 315 IPR001680 GO:0005515
Cme06g00781 1727 SMART WD40_4 234 273 IPR001680 GO:0005515
Cme06g00781 1727 SMART WD40_4 433 498 IPR001680 GO:0005515
Cme06g00781 1727 SMART WD40_4 531 569 IPR001680 GO:0005515
Cme06g00781 1727 MobiDBLite consensus disorder prediction 993 1019 - -
Cme06g00781 1727 MobiDBLite consensus disorder prediction 1346 1403 - -
Cme06g00781 1727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Cme06g00781 1727 Coils Coil 685 705 - -
Cme06g00781 1727 CDD WD40 237 612 - -
Cme06g00781 1727 MobiDBLite consensus disorder prediction 1122 1146 - -
Cme06g00781 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Cme06g00781 1727 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 42 1726 - -
Cme06g00781 1727 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Cme06g00781 1727 Gene3D - 211 388 IPR015943 GO:0005515
Cme06g00781 1727 MobiDBLite consensus disorder prediction 1218 1242 - -
Cme06g00781 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Cme06g00781 1727 Gene3D - 469 669 IPR015943 GO:0005515
Cme06g00781 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Cme06g00781 1727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Cme06g00781 1727 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Cme06g00781 1727 PANTHER WD REPEAT DOMAIN 9 42 1726 - -
Cme06g00781 1727 MobiDBLite consensus disorder prediction 1225 1242 - -
Cme06g00781 1727 MobiDBLite consensus disorder prediction 822 868 - -
Cme06g00781 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 621 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00781 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3349.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00781 Cme-Chr6:5156634 Cme04g01625 Cme-Chr4:23522485 4.37E-06 dispersed
Cme06g00781 Cme-Chr6:5156634 Cme11g00160 Cme-Chr11:1713540 1.55E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00781 Cme_Chr06 FPKM 18.373522 19.247597 10.320661 10.527276 18.835684 15.52451 17.292028 18.293095 18.158495 18.070122