Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00787 ATGGGAGAAGAGAAAATAAAAGTTGAAATAAGAGAATTCAATGAGGAAAATAGAGACATAGAAATGGTGGAAAAACTAGAAAGAAGCTGTGAAATTGGGTCTAAAATAAAAGGAGCTTCCATTTTCACAAATATGATGGGTGATCCTCTTTGTAGGATTACATTCTTCCCTCTTCATATTATGTTGGTGGCTGAGCTGCCAGAAAATGGAGAGATTGTGGGAGTGGTTAGAGGCTGTATCAAGTCTTTGGGGATTGCCCGTTCCGGTGTCGGTGTCGGAGAAGCTAATACGATGAAGATTGGTTGCATATTGGGACTTCGTGTTTCGCCTGCACATAGAACGATGACGGATGATTTTAAAGTTTTGACGAATTTTGGAAAAAGGAGGATGGGAATTGGACTGAAGCTTGTACACTCAGTTGAAGAATGGGTTATAAGAAATGGAGCTAATTATGCATTTCTAGCAATAGAGAAGAAGAACAAAGCCTCAAAGAATCTCTTCACTAAAAAATGCAACTATGTAAAATTCAGCTCATTGGTGATTTTCAGACAACCACTTATTGTGTTCCCAACAACAAAAGATCACAATATTATTTCTAAAGGAGAAATAATAAAAACAGAGAAACTCAACATAGAACAAGCCATTTCATTCTATACAAACACTCTCACAACTAAAGGAGGAGTATATCCAATGGATTTTGATATGATTTTGAAGGAAAAACTAAGTCTTGGCACCTGGGTTTCTTATTTCAATCAAGAAGATTGGACTCATCATTTGATTTGTTCACAAAAAGATTCAGATCAGATTTACCAAAGAATGCCAAGTTCTTGGGTTGTGTTTAGCATATGGAATACCTGCAAAGCATATAAGTTTCAAATAAGGGAATCAAAAAGTGATCAATTATTACCTCTAAGGTTCTTGAAAAGTGCAAGAAAAAAGTTCGTTTCTTGCTTCAAAATGCCAAATTCTGTGTCCTTTGGGAAGTCATTTGGATTCTTCTTCCTGTATGGGATATTTGGGGAGGGGGAGAGAGTGGGAGAGCTTGTCGAGTCGATATGGATTTTTGCTTCGAGATTGGCTGAAGACGAGAAGGATTGCAAGGCTATTGTTACTGAATTGTCTGTTTCTGATCCAATCATTAACCACGTCCCACGGAACGTTTCCATGTCTCGCGTCAATGATAACTTGTACCTGAAAAGGTTGAGTGTACATAGTGATGATGAAAAGGATGAAACATTGTTGTCAAAAGATATGGAAACAGCTGCAAATGTGATTGTTGACCCAAGAGACTTCTAG 1296 37.58 MGEEKIKVEIREFNEENRDIEMVEKLERSCEIGSKIKGASIFTNMMGDPLCRITFFPLHIMLVAELPENGEIVGVVRGCIKSLGIARSGVGVGEANTMKIGCILGLRVSPAHRTMTDDFKVLTNFGKRRMGIGLKLVHSVEEWVIRNGANYAFLAIEKKNKASKNLFTKKCNYVKFSSLVIFRQPLIVFPTTKDHNIISKGEIIKTEKLNIEQAISFYTNTLTTKGGVYPMDFDMILKEKLSLGTWVSYFNQEDWTHHLICSQKDSDQIYQRMPSSWVVFSIWNTCKAYKFQIRESKSDQLLPLRFLKSARKKFVSCFKMPNSVSFGKSFGFFFLYGIFGEGERVGELVESIWIFASRLAEDEKDCKAIVTELSVSDPIINHVPRNVSMSRVNDNLYLKRLSVHSDDEKDETLLSKDMETAANVIVDPRDF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5218607 5221541 + MELO3C006714.2.1 Cme06g00787 329936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00787 431 Pfam Acetyltransferase (GNAT) family 64 173 IPR000182 GO:0016407
Cme06g00787 431 Gene3D - 4 179 - -
Cme06g00787 431 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 8 175 IPR016181 -
Cme06g00787 431 CDD NAT_SF 61 154 - -
Cme06g00787 431 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 5 431 - -
Cme06g00787 431 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 5 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00787 - - - csv:101215331 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00787 Cme-Chr6:5218607 Cme12g00055 Cme-Chr12:550508 8.81E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g71 . . . . . . . . . . . . . Car14g01401 Sed12g0774 . Cpe03g01329 Bhi01g01087 Tan10g1074 Cmetu06g1614 . Hepe05g1384 . Lcy11g1339 . . . . . . . . . . . Lsi05g01594 . . Cme06g00787 . Blo07g00146 . . . Bpe13g00694 . Bma06g01468 . . Cmo14g01621 . . . . . . . . . . . . . Cla05g00704 Cam05g0770 Cec05g0779 Cco05g0772 Clacu05g0760 Cmu05g0726 Cre05g0800 . Csa03g01516 Chy06g00753 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013261 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41469 PF00583 Acetyltransf_1 1.40E-07 CL0257 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00787 Cme_Chr06 FPKM 4.720189 5.704649 5.385926 4.880435 5.654031 5.75455 6.301944 5.398476 4.939072 4.287178