Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00788 ATGCAAGTCTTCTCTTCTCCTCCTTCAACCGCAAGCTTCAATCTCTTCTCTTCCTCTCAGAGTTCAACTAACCTGTCGAAGTACAGATGCAAAATCTTCAATACACATCTACATTCGGCCCACAATTCCCTCTCCCTTCCGCCGTGCTGTTCTTCGAGAGATTCTTCGACGGCGGTTCTCGTCGCCGATCGATCATCGGAAGGGGCGAACGGAGAGGCGTCTGAGGAGGTAATTACGATTCGAAGGCCGGTTATGGAGTTTCCTAGCGAGGATGAGGAGACGGAGGTTGAGAGTAGCACTCCGATGATAGATGTAAGGCTAACGGAGATTGCAAAGAAGATGCCGATTTTTGAACCGGAGAATCGAGTTGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAGGGCGAAGATGTTGGCGAGGAATTTTCAGTATGATGAAGCACAACAAGTCCTTCAGAAGTGTATAAATAAATGGCCGGAGGATGGGCGGGCTTATGTAGCATTGGGGAAGATGTTGGGAAAGCAAATGAAAGCAGCTGAAGCAAAAGCAGTGTATGAGAGAGGCTGCCAAGCCACACAAGGAGAGAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAACATCAGGAAGGCAAGAGAGCTGTTCGATGCAGCCACAGTAGCAAACAAGAAACACATTGCAGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAAGGGAACATCAAGAAGGCCAGGAATTTACTCGCCAAAGGCCTCAAATACTGTGGTGGAAATGAGTATATTTACCAGACACTTGCACTGCTCGAAGCGAAATCGAATCGGTATGAGCAGGCTCGTTATTTGTTTAAGCAGGCTACCAAATGCAACCCCAAGAGCTGTGCTAGTTGGCTTGCATGGGCGCAGCTGGAGATGCAGCTGGAGAACAACTTTCTTGCTAGAGAACTATTTGAGAAAGCCATCCAGGCCAGCCCCAAGAACAGATTTGCGTGGCATATATGGGGACTCTTTGAAGCTAATTTGGGAAATATCGAAAAGGGAATGAAACTTTTAAAGATAGGCCATGTCCTCAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCTTCAGCAAGCCTTGCTCGAGTTTTGTTTAGACGTGCATCTGAACTGGATCCAAAGCATCAGCCTGTGTGGATTGCATGGGGATGGATGGAATGGAAAGAAGGAAACATAGTGAAGGCAAGGGAGCTTTATCAAAGAGCATTACTGATTGATTCAGCTAGTGAGAGTGCAGCTAGATGCCTTCAGGCTTGGGGTGTTCTGGAACAGAGAGTAGGCAATCTGTCTGCAGCAAGAAGATTATATAGATCCTCTCTAAACATAAATTCTCAGAGTTATGTAACATGGATGACGTGGGCAGCATTGGAAGAGGATCAAGGGAATGCAATCCGAGCTGAGGAAATCCGAAATCTCTATTTCCAGCAGCGAACTGAAGTTGTGGATGATGCTTCATGGGTTATGGGATTTTTAGACGTTATTGACCCAGCACTGGACATCATAAAGAGACTGTTGAAGCTGGAGCAAGACCCATTCGCCGCATCTAGAACAGCAGATGGAGGTCCTCGAAACGCCTCCATGGATGACTCGGCTGCTTCCTCTTCTAGTAACAATGTGGTTGAAAGTGAAACTGGGTTTGATTTGGATGCGTTTATTATGAAAAAGTTGTCCATAGACACATCAAAACTTGAAATTCAGCTGGAAACAACTCGGCCCAAAAGGTTCAAGTATCAAAGGAGGCAATTGAAATCAGAAAACAGACAAGAAATGGCTGTTTCAAAAAGCCAAAGAACAGAATCATCATCAGGATAA 1911 46.1 MQVFSSPPSTASFNLFSSSQSSTNLSKYRCKIFNTHLHSAHNSLSLPPCCSSRDSSTAVLVADRSSEGANGEASEEVITIRRPVMEFPSEDEETEVESSTPMIDVRLTEIAKKMPIFEPENRVDSSALERPLIINLDLALYRAKMLARNFQYDEAQQVLQKCINKWPEDGRAYVALGKMLGKQMKAAEAKAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQLENNFLARELFEKAIQASPKNRFAWHIWGLFEANLGNIEKGMKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRRASELDPKHQPVWIAWGWMEWKEGNIVKARELYQRALLIDSASESAARCLQAWGVLEQRVGNLSAARRLYRSSLNINSQSYVTWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPALDIIKRLLKLEQDPFAASRTADGGPRNASMDDSAASSSSNNVVESETGFDLDAFIMKKLSIDTSKLEIQLETTRPKRFKYQRRQLKSENRQEMAVSKSQRTESSSG 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5222561 5229534 - MELO3C006715.2.1 Cme06g00788 329937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00788 636 MobiDBLite consensus disorder prediction 548 572 - -
Cme06g00788 636 Pfam Tetratricopeptide repeat 279 340 - -
Cme06g00788 636 SMART tpr_5 170 203 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 273 306 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 239 272 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 375 408 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 205 238 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 409 442 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 307 340 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 136 169 IPR019734 GO:0005515
Cme06g00788 636 SMART tpr_5 446 479 IPR019734 GO:0005515
Cme06g00788 636 MobiDBLite consensus disorder prediction 607 636 - -
Cme06g00788 636 Gene3D Tetratricopeptide repeat domain 134 215 IPR011990 GO:0005515
Cme06g00788 636 Gene3D Tetratricopeptide repeat domain 216 509 IPR011990 GO:0005515
Cme06g00788 636 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 23 621 IPR044624 GO:0003729|GO:0006397
Cme06g00788 636 SUPERFAMILY TPR-like 132 385 IPR011990 GO:0005515
Cme06g00788 636 MobiDBLite consensus disorder prediction 607 625 - -
Cme06g00788 636 SUPERFAMILY TPR-like 343 513 IPR011990 GO:0005515
Cme06g00788 636 SMART hat_new_1 287 319 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 423 458 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 150 182 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 253 285 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 321 353 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 219 251 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 184 217 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 389 421 IPR003107 GO:0006396
Cme06g00788 636 SMART hat_new_1 460 492 IPR003107 GO:0006396
Cme06g00788 636 ProSiteProfiles TPR repeat profile. 273 306 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00788 - - - csv:101215572 1180.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00788 Cme-Chr6:5222561 Cme11g02285 Cme-Chr11:29919835 2.19E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00788 Cme_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.367824