Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00790 ATGGTTTCTAGTAATCGAGCAACTCATTCTCATCAACAACAAGCACAGTCTTCGAACACGAATACGAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTCGATGCTCGTCTCCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATAGAAGAGGCTAGTTTTCGAGTTATTGCATACAGTGAAAACGCTAGGGAATTGCTTGGTCTGACGCCTCAATCAGTGCCAAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAGGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTATGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAGAACCGCGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGCTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTAATCAATGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGGTTGTGTGCCACCATACTTCTGCTCGGTGCATTCCGTTCCCGCTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGATGTCTGAAAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGAGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGAGACTCATTTAAGGATGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAAACTGCAACTGCACCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCAGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTAGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAATGTAGAGTTAAAATTGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTTGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTGGTAGGAGAGGTTTTCGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGACAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCTGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAATGTATTGATGATGGTACGATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATCAATGCTGTTGTTAGTCAAGTGATGATATTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGTGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTATGCTCCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGAAGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAACTTTTCCCATTAACATAAGATACCTGTGTAATTTCCCAGCCATTGTTTATAAGCCAAGCTCTGAGCTTACATGTCGTCGAGGCCATGTGATATAA 3405 43.26 MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDKLVSRALKGEEDKNVELKLRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSEGITLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGETFPINIRYLCNFPAIVYKPSSELTCRRGHVI 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5236998 5242817 + MELO3C006717.2.1 Cme06g00790 329939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00790 1134 SMART HisKA_10 898 962 IPR003661 GO:0000155|GO:0007165
Cme06g00790 1134 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Cme06g00790 1134 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 1107 - -
Cme06g00790 1134 SMART gaf_1 229 417 IPR003018 GO:0005515
Cme06g00790 1134 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 954 IPR036097 GO:0000155|GO:0007165
Cme06g00790 1134 PANTHER PHYTOCHROME 7 1107 - -
Cme06g00790 1134 SMART pas_2 756 826 IPR000014 -
Cme06g00790 1134 SMART pas_2 624 691 IPR000014 -
Cme06g00790 1134 Gene3D - 961 1107 IPR036890 -
Cme06g00790 1134 CDD PAS 768 876 IPR000014 -
Cme06g00790 1134 Pfam His Kinase A (phospho-acceptor) domain 902 962 IPR003661 GO:0000155|GO:0007165
Cme06g00790 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 737 IPR035965 -
Cme06g00790 1134 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Cme06g00790 1134 Pfam GAF domain 229 407 IPR003018 GO:0005515
Cme06g00790 1134 Gene3D PAS domain 84 332 - -
Cme06g00790 1134 Pfam PAS fold 625 741 IPR013767 GO:0006355
Cme06g00790 1134 Pfam PAS fold 757 876 IPR013767 GO:0006355
Cme06g00790 1134 Gene3D - 879 960 - -
Cme06g00790 1134 TIGRFAM sensory_box: PAS domain S-box protein 629 743 IPR000014 -
Cme06g00790 1134 Gene3D - 210 568 IPR029016 -
Cme06g00790 1134 ProSiteProfiles Histidine kinase domain profile. 905 1103 IPR005467 -
Cme06g00790 1134 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Cme06g00790 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Cme06g00790 1134 SUPERFAMILY GAF domain-like 209 404 - -
Cme06g00790 1134 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Cme06g00790 1134 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Cme06g00790 1134 CDD PAS 633 741 IPR000014 -
Cme06g00790 1134 Gene3D PAS domain 770 878 - -
Cme06g00790 1134 Gene3D PAS domain 620 745 - -
Cme06g00790 1134 SMART HKATPase_4 1010 1125 IPR003594 -
Cme06g00790 1134 Gene3D - 412 585 IPR043150 -
Cme06g00790 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 875 IPR035965 -
Cme06g00790 1134 CDD HisKA 891 954 IPR003661 GO:0000155|GO:0007165
Cme06g00790 1134 PIRSF Phytochrome_conventional 12 1120 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cme06g00790 1134 Pfam Phytochrome region 420 593 IPR013515 GO:0006355|GO:0009584
Cme06g00790 1134 SUPERFAMILY GAF domain-like 415 592 - -
Cme06g00790 1134 Pfam PAS fold 80 196 IPR013654 GO:0006355
Cme06g00790 1134 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1010 1103 IPR003594 -
Cme06g00790 1134 MobiDBLite consensus disorder prediction 1 29 - -
Cme06g00790 1134 CDD HATPase_Phy-like 1009 1112 IPR044767 -
Cme06g00790 1134 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 973 1103 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01314 Cme-Chr3:22648039 Cme06g00790 Cme-Chr6:5236998 0 dispersed
Cme03g01317 Cme-Chr3:22681518 Cme06g00790 Cme-Chr6:5236998 0 dispersed
Cme06g00790 Cme-Chr6:5236998 Cme12g01234 Cme-Chr12:20494555 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00790 K12121 - csv:101212197 2184.84