Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00793 ATGGATATGACGTTTGTTAACAAAAACACTGTTTTGGGTATCCTATGTTTTACTCTATTTACCTTGTTTGGAACTTGTTTCTCTAGAGCTTTTACAGCTAATTTTGTGTTTGGGGATTCATTGGTTGAGGTTGGAAACAATAACTACATTCCATCACTCTCCCGGGCCAACTACGTCCCAAACGGTATCGATTTTGGAAGGCCAACTGGCCGATTCACAAACGGGCGAACCATTGTTGACATAATAGGTCAGGAGCTTGGGTTCAAGACATTCACTCCCCCATACTTGGCACCATCCACAACTGGACCGGTGATTATTCGAGGCATCAACTATGCTTCGGGTTCAGCTGGAATCTTAAACAACACAGGAAAAATCTTTATTGCTCGAATCAACATGGATGCACAAATTGATAACTTTGCAAATACCAGACAAGATATCATCACCATGATTGGCCTTCCTTCTGCCATTGATTTGCTTAGAACCTCCATTTTCTCCATAACCATTGGTTCAAATGACTTCATTAATAACTACTTTACACCAGTCCTCTCTGATTCAGGACACCGGTTGATTCCTCCAGAGTTGTTTGTTGGCTCCATGATTTCGAGATACAGACTCCAACTTACAAGACTCTACAATCTAGGAGCTAGAAGGATCGTAGTGGTAAACGTCGGACCAATCGGATGCATTCCTTATCAGAGAGATTCAAATCCTTCGTTAGGAAACAACTGCGCAAATTCCCCTAACCTAATGGCTCAGTTATTCAACAGCCAATTAAGAGGTCTACTCACAGAACTCGGAGCACGATTTCAAGATTCGAATTTCCTTTACGCAGATGCATTTCACATCGTTCAAGATATTGTCCAGAATCACGCATCATACGGGTTTGAGAATGCTGACTCGGCGTGCTGCCATATCGCCGGACGGTACGGCGGTCTTTTTCCCTGTGGGCCGCCGTCGAGCGTGTGTGTGGACAGGTCGAAGTACGTGTTTTGGGATTCATTTCATCCTTCTGAAGCTGCGAACTCCATCATCGCCGGGCGGCTCTTGAACGGCGACGCCGATGATATTTGGCCTATCAATATTCGAGAACTTGAACGTCTTAATTAA 1107 44.17 MDMTFVNKNTVLGILCFTLFTLFGTCFSRAFTANFVFGDSLVEVGNNNYIPSLSRANYVPNGIDFGRPTGRFTNGRTIVDIIGQELGFKTFTPPYLAPSTTGPVIIRGINYASGSAGILNNTGKIFIARINMDAQIDNFANTRQDIITMIGLPSAIDLLRTSIFSITIGSNDFINNYFTPVLSDSGHRLIPPELFVGSMISRYRLQLTRLYNLGARRIVVVNVGPIGCIPYQRDSNPSLGNNCANSPNLMAQLFNSQLRGLLTELGARFQDSNFLYADAFHIVQDIVQNHASYGFENADSACCHIAGRYGGLFPCGPPSSVCVDRSKYVFWDSFHPSEAANSIIAGRLLNGDADDIWPINIRELERLN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5253143 5254781 + MELO3C006719.2.1 Cme06g00793 329942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00793 368 Gene3D SGNH hydrolase 27 351 IPR036514 -
Cme06g00793 368 Pfam GDSL-like Lipase/Acylhydrolase 35 345 IPR001087 GO:0016788
Cme06g00793 368 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 18 365 - -
Cme06g00793 368 CDD SGNH_plant_lipase_like 32 352 IPR035669 -
Cme06g00793 368 SUPERFAMILY SGNH hydrolase 110 350 - -
Cme06g00793 368 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 18 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00793 - - - csv:101216051 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00793 Cme-Chr6:5253143 Cme11g00247 Cme-Chr11:2798476 1.70E-122 dispersed
Cme06g00793 Cme-Chr6:5253143 Cme12g01250 Cme-Chr12:20635951 1.76E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00793 Cme_Chr06 FPKM 23.229786 25.172693 22.276869 22.632101 26.25699 24.661972 27.19169 28.467806 24.236483 23.62652