Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00800 ATGACAAAGAGTGATATTGATCATCTCGACGACGGTTACCGGTGGCGAAAGTACGGTCAAAAAGCTGTGAAGAATAGCCCTTACCCCAGAAGCTATTATCGTTGTACAACGGCAGGGTGTGGTGTGAAGAAGAGAGTAGAGCGATCGTCCGGCGACCATACGATAGTCGTTACGACGTACGAAGGCCAACACACTCACCAAAGTCCGATAATGCCGCGAGGGAGTCTCAGAGTATTACCAGAATCCACCAACAACAGCCTCACCGTCGATCACGACACCACCACCACCGGACTTTTATTCCAACACAACACTAGTTCCCAACCTTTCATGTATAGCTCTCCACCCTCACCATTTCTAACAATCAACTCGTCATCGGTGGCGGCCACGAGTACTCCCCATCCTCCTCCTCCTATTTCGTTTCAGCCACCGTCTTTGCCGCAAGCTTCCGTTCGAGACCACGGGCTTTTACAGGACTTAGTGCCATTGCAAATGAGAAATGAACCAAAAGATGAGCAAGATGGATGA 525 49.71 MTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHTIVVTTYEGQHTHQSPIMPRGSLRVLPESTNNSLTVDHDTTTTGLLFQHNTSSQPFMYSSPPSPFLTINSSSVAATSTPHPPPPISFQPPSLPQASVRDHGLLQDLVPLQMRNEPKDEQDG 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5322743 5323966 + MELO3C006725.2.1 Cme06g00800 329949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00800 174 SMART WRKY_cls 9 68 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00800 174 ProSiteProfiles WRKY domain profile. 4 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00800 174 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 1 161 - -
Cme06g00800 174 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 161 IPR044810 GO:0003700
Cme06g00800 174 MobiDBLite consensus disorder prediction 122 174 - -
Cme06g00800 174 SUPERFAMILY WRKY DNA-binding domain 3 69 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g00800 174 Pfam WRKY DNA -binding domain 10 67 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g00800 174 Gene3D WRKY domain 1 70 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00800 Cme11g02090 CCT
Cme06g00800 Cme11g02090 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00800 Cme-Chr6:5322743 Cme08g00164 Cme-Chr8:1148798 1.90E-37 dispersed
Cme11g02090 Cme-Chr11:28560931 Cme06g00800 Cme-Chr6:5322743 2.87E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41470 PF03106 WRKY 5.60E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00800 - - cmo:107990312 333.569