Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00815 GTCAAATACAATAGTAAAAAGAGAGAGTCGATTATATATTTGGAAAAAGCTATCTTCACTACCTTATCCAACCCAAACACCACATCAACTGTCGGAAGAAGGGAAATGGCTTCCATGGCTCAGCAATTTACTGGGTTGCGATGCGTTCCTCTTTCTTCATCGCGTCTCTCCAAGCCATTTTCTTCTAAGCATTTGCTGAACAAGTCCCGTTCGCTTCCTGTTCAAGCTGCAGTTATTTCGGGCCCCATTCCCAGTCCTCAGACCAAGGAGCGTTTCAAGCTCAAGGAGGTCTTTGAGGAGGCTTATGAACGTTGCCGTAATGCCCCTGTAGAAGGCATATCTTTCACTCTCGAGGACTTCCATGCCGCTCTTGAAAAATACGACTTCGATTCTGAATTGGGAACTAAGGTGAAAGGAACTGTGTTTTGTACGGATAATAATGGAGCACTTGTTGACATTACTGCCAAGTCATCTGCATATTTGCCATTGCAAGAGGCTTGCATTCACAGAATAAAACACGTAGAAGAAGCAGGAATATTTCCTGGCTTGAGAGAGGAGTTTGTTATTATTGGTGAGAATGAATCTGATGATAGCTTGATTTTGAGCTTGAGATCCATTCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGACGTTGTTGTCAAGGGTAAGGTGGTTGATGCTAACAAAGGTGGAGTAGTGGCAGTTGTTGAAGGCCTAAGAGGATTTGTCCCTTTCTCACAGATATCAACGAAATCAACTGCTGAAGAGCTTCTCAACAAGGAGCTTCCTCTAAAGTTTGTGGAGGTTGATGAAGAACAATCGAGGCTTGTCCTTAGTAACCGTAAAGCCATGGCTGACAGCCAGGCACAACTTGGAATTGGATCAGTGGTCACCGGGACGGTTCAAAGCCTTAAACCTTATGGTGCATTCATTGACATTGGTGGAATCAATGGTCTTCTTCATGTTAGTCAAATCAGTCATGATCGGATATCGGATATTGCAACAGTTCTTCAGCCTGGAGATACTCTCAAGGTCATGATATTGAGCCACGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAGTTAGAGCCCACACCTGGGGATATGATTCGCAATCCAAAGCTTGTTTTTGAGAAGGCTGAGGAGATGGCACAAACGTTCAGGCAAAGAATAGCCCAGGCAGAGGCATTGGCACGTGCAGACATGCTTAGGTTTCAGCCTGAGAGTGGTTTGACTTTGACTACTGATGGAATATTGGGACCAATTACTCCAGAGTTACCTGTAGAAGGTTTAGATTTGAATGATGTACCTCCAGCTGAAGAGTGA 1347 44.62 VKYNSKKRESIIYLEKAIFTTLSNPNTTSTVGRREMASMAQQFTGLRCVPLSSSRLSKPFSSKHLLNKSRSLPVQAAVISGPIPSPQTKERFKLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGIFPGLREEFVIIGENESDDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLNKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEALARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5519904 5524344 + MELO3C006733.2.1 Cme06g00815 329964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00815 448 PANTHER 30S RIBOSOMAL PROTEIN S1 36 448 - -
Cme06g00815 448 Gene3D - 293 371 IPR012340 -
Cme06g00815 448 SMART S1_6 220 286 IPR022967 -
Cme06g00815 448 SMART S1_6 297 367 IPR022967 -
Cme06g00815 448 SMART S1_6 132 204 IPR022967 -
Cme06g00815 448 Gene3D - 215 292 IPR012340 -
Cme06g00815 448 Pfam S1 RNA binding domain 220 284 IPR003029 GO:0003676
Cme06g00815 448 Pfam S1 RNA binding domain 298 367 IPR003029 GO:0003676
Cme06g00815 448 PRINTS Ribosomal protein S1 signature 243 260 IPR035104 -
Cme06g00815 448 PRINTS Ribosomal protein S1 signature 225 241 IPR035104 -
Cme06g00815 448 PRINTS Ribosomal protein S1 signature 152 166 IPR035104 -
Cme06g00815 448 PRINTS Ribosomal protein S1 signature 134 152 IPR035104 -
Cme06g00815 448 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 36 448 - -
Cme06g00815 448 Gene3D - 117 214 IPR012340 -
Cme06g00815 448 CDD S1_RPS1_repeat_hs4 299 367 - -
Cme06g00815 448 CDD S1_RPS1_repeat_ec1_hs1 134 204 - -
Cme06g00815 448 CDD S1_RPS1_repeat_ec2_hs2 233 286 - -
Cme06g00815 448 SUPERFAMILY Nucleic acid-binding proteins 298 377 IPR012340 -
Cme06g00815 448 ProSiteProfiles S1 domain profile. 134 204 IPR003029 GO:0003676
Cme06g00815 448 SUPERFAMILY Nucleic acid-binding proteins 129 230 IPR012340 -
Cme06g00815 448 ProSiteProfiles S1 domain profile. 222 286 IPR003029 GO:0003676
Cme06g00815 448 Coils Coil 384 404 - -
Cme06g00815 448 ProSiteProfiles S1 domain profile. 299 367 IPR003029 GO:0003676
Cme06g00815 448 SUPERFAMILY Nucleic acid-binding proteins 217 290 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00815 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - csv:101222582 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00929 Cme-Chr3:17752926 Cme06g00815 Cme-Chr6:5519904 3.23E-175 dispersed
Cme03g01060 Cme-Chr3:19975147 Cme06g00815 Cme-Chr6:5519904 7.51E-28 dispersed
Cme06g00815 Cme-Chr6:5519904 Cme07g01905 Cme-Chr7:24319719 1.09E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002885 2 7 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 1 2 2 1 5 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00815 Cme_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0