Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00821 ATGGCTCTCGACGCCGAAGCTGCACCGGCGGCGGAGTTGGCGCTTTCTGATACCGACATCAACTGGAACAGGTTGGACAAGACAAAGTTTCATATAATTGGGGCAATACTCTTTACGGCTCAGTCAGCCTTGTTACATCCAACAGCGGTTGTAAAAACTAGAATGCAAGTTGATGGATCTGGGCTTTCTCACATGCGTGGAGTCTCAGTTTTCTGGAAAATATTGAAGTCTGATGGAGTCTCTGGCTTGTATAGAGGATTTGGTACTTCAGCGATTGGATCATTACCTGGTCGAGTACTGGCTTTAACATCACTAGAAGTATCAAAAGACATAATGTTGAAATATACTGAAAATCTGGAAATGCCTGAAGCAACGCGTGTTGGTCTTGCTAATGGAGTTGCAGGCATGATCTCAAATTTAGTTTCATGCATATACTATGTGCCATTGGACGTGGTTTGCCAGAGGCTGATGGTTCAAGGGCTTCCTGGAACCACCTACTGCAACAGCCCACTTGATGTTGTCAGAAAAGTGATGAAGGCCGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACGGCTGTAACTCAGTCTCCAGCATCTGCCCTCTGGTGGGGTGTTTATGGTGCTGCTCAACATATTATCTGGAGGAGCTTAGGATATCGAGATAGCATGGAGAAGAAACCTTCTCACATGGAGATGGTAACAGTTCAGGCCACAGCAGGAATGGTGGCAGGTGCTTGTTCCTCTGTTATTACAACTCCCGTTGACACAGTAAAAACGCGACTTCAGATCTCTCCAATGCAGGTCATCGATAACTATGGAATTGGAAGACCATCCGTGCTCAAGACATCAAGAGCACTTCTCAAGGAAGATGGATGGGTGGGATTTTACAGAGGCTTTGGACCTCGGTTTTTGAATATGTCACTGTATGGAACCACGATGATAGTCACTTATGAACTGATCAGTAAGTCCGGATTTCTCGTTTTTCTCATTTGA 999 45.05 MALDAEAAPAAELALSDTDINWNRLDKTKFHIIGAILFTAQSALLHPTAVVKTRMQVDGSGLSHMRGVSVFWKILKSDGVSGLYRGFGTSAIGSLPGRVLALTSLEVSKDIMLKYTENLEMPEATRVGLANGVAGMISNLVSCIYYVPLDVVCQRLMVQGLPGTTYCNSPLDVVRKVMKAEGFRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLGYRDSMEKKPSHMEMVTVQATAGMVAGACSSVITTPVDTVKTRLQISPMQVIDNYGIGRPSVLKTSRALLKEDGWVGFYRGFGPRFLNMSLYGTTMIVTYELISKSGFLVFLI 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5624870 5627883 + MELO3C006743.2.1 Cme06g00821 329970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00821 332 Gene3D Mitochondrial carrier domain 120 326 IPR023395 -
Cme06g00821 332 PANTHER OS01G0329400 PROTEIN 1 324 - -
Cme06g00821 332 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 324 - -
Cme06g00821 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Cme06g00821 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 325 IPR018108 -
Cme06g00821 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 111 IPR018108 -
Cme06g00821 332 Pfam Mitochondrial carrier protein 237 324 IPR018108 -
Cme06g00821 332 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Cme06g00821 332 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Cme06g00821 332 SUPERFAMILY Mitochondrial carrier 23 321 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00821 K15121 SLC25A44; solute carrier family 25, member 44 - csv:101213375 610.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00821 Cme-Chr6:5624870 Cme09g00204 Cme-Chr9:1610689 9.42E-104 dispersed
Cme06g00821 Cme-Chr6:5624870 Cme07g00195 Cme-Chr7:1306859 1.24E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g230 . . . . . . . . . . . Cma14g01569 . Car14g01383 . . Cpe03g01311 Bhi01g01116 . . . . . . . . . . . . . . Cone15ag0699 . . Lsi05g01397 . . Cme06g00821 . . . . . . . . . . Cmo14g01603 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002174 2 4 1 1 1 2 3 2 2 2 2 1 4 2 2 3 2 3 3 1 2 2 2 2 2 2 2 2 3 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00821 Cme_Chr06 FPKM 13.619879 18.127201 14.540443 14.476274 11.188368 9.418458 9.607634 10.91373 10.850735 10.809297