Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00824 ATGGCGTCGCCACCGTTTTCCGCCATCTTCGGCCACCGGAATGTCACATTTCCATGGTCATTACTCCTCCTCCTACTACCACCGCTATTACTTTCACCTTCTCTCACATTCGCCTCACCTTGCCGTACTTCCTGCGGCAACATTCCGATTAAATACCCCTTCGGAATCGACGACGGCTGCGGAGCACCTCAATTTCGCCGCATGTTCAATTGCTCCAACGATCTTTTCTTTCTCACTCCCTCCGGTAGCTACAAAGTTCAATCCATCGATTACGACGAACAATCCATGGTGATCTACGATCCGGCAATGTCTACCTGCTCAATCCTCCAACCGCATCACGATTTCACCATGACGGACATTCAATCGATCATAATTCCGCCATCGCCAGACACAGTCTTCGCTCTCCTCAACTGCTCGATCGATTCTCCGATCCTCAACCACTACAAGTACCTCTGCTTCAATTTCTCCGGCCATTCATGCGATGAACTGTACGGGAGTTGCAACGCGTTCAGAGTGTTCCATTTGTTGACGAACAGTACATCGCCGCCATGCTGTTTTACGGGATACGATACGGTGAAGATGATGAGTATGAACATTTTGGATTGTACGCATTACACGACGGTGTTGAATACGGAGAATCTGAAGGGAGTAGGGGCTTTGGATTGGGAATATGGAATGAAATTGAGCTTTTCGGTTGCGAATTTGGGATGTGATCGGTGTTCGAAATCGGGAGGAAATTGTGGATTTGATACGGAAACGGAAGCAAAAATTGAAATTTAA 780 47.69 MASPPFSAIFGHRNVTFPWSLLLLLLPPLLLSPSLTFASPCRTSCGNIPIKYPFGIDDGCGAPQFRRMFNCSNDLFFLTPSGSYKVQSIDYDEQSMVIYDPAMSTCSILQPHHDFTMTDIQSIIIPPSPDTVFALLNCSIDSPILNHYKYLCFNFSGHSCDELYGSCNAFRVFHLLTNSTSPPCCFTGYDTVKMMSMNILDCTHYTTVLNTENLKGVGALDWEYGMKLSFSVANLGCDRCSKSGGNCGFDTETEAKIEI 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5633061 5634018 + MELO3C031621.2.1 Cme06g00824 329973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00824 259 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN 24 256 - -
Cme06g00824 259 Pfam Wall-associated receptor kinase galacturonan-binding 41 100 IPR025287 GO:0030247
Cme06g00824 259 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED 24 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00824 - - - cmo:103483914 516.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00824 Cme-Chr6:5633061 Cme12g01686 Cme-Chr12:23775985 7.17E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g243 . . . . . . . . . . . Cma14g01567 . Car14g01382 Sed12g0749 . Cpe03g01310 Bhi01g01120 Tan10g1106 Cmetu06g0325 . Hepe05g1352 . . . . . . . . . . . . . Lsi05g01393 . . Cme06g00824 . . . . . . . . . . Cmo14g01602 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013850 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00824 Cme_Chr06 FPKM 1.470149 1.71029 5.905225 4.651534 7.055484 6.293551 8.322287 1.960153 1.666426 2.5014