Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00830 ATGATGGCCCCTATTCGCACCTCTGGATTTGTTGATCCAGGGTGGGAGCATGGAGTTGCTCAAGATGAAAAGAAGAAGAAAGTTAAATGCAATTACTGTGGGAAAATAGTAAGTGGTGGCATATATAGATTGAAGCAACATTTAGCTCGAGTTTCAGGGGAAGTTACTTATTGTGACAAGGCTCCGGAGGAAGTATATTTGAGAATGAGAGAAAACCTTGAAGGTTGTCGTTCCAATAAGAAACCAAGGCAATCTGAAGATGATGAACAGTCCTATTTGAACTTCCATTCCAATGATGATGAAGAAGATGGTTCACATGTGACATATAGAAATAGAGGAAGGCAACTGATGGGAAACAGGAATGTTGGTACTAACATGACCCCTCTGAGGTCATTAAGATATGTTGATCCTGGATGGGAACATGGTGTGGCTCAAGATGAAAGGAAGAAGAAGGTAAAGTGCAACTACTGTGAAAAGATAGTAAGTGGAGGTATTAATAGGTTTAAACAGCATCTAGCCAGAATTCCTGGAGAAGTGGCTCCTTGCAAACATGCTCCCGAGGAAGTGTATCTTAAGATCAAAGAGAATATGAAATGGCATCGTACTGGAAGGAGACATGTACAGACTGATGCCAATGAGATATCGGCTTATTTTATGCAATCAGATAATGAAGAAGAAGAAGAAGAGAAAGAGGAATCGCTGCATCATATTAGCAAGGAAAGGTTTATTGATGGTGACAAAAGATTGAGCAAAGATTTGAAAAGTACTTTCAGGGGAATGGCCCCTGGTGGAGGATCCGAACCGTCAGTTAAAAGGTCAAGGTTAGATTCTGTTTTTCTGAAAACCACCAAAAGACAAACTGAACAGGTGCAGAAACAAGCTTTAGTAAAAAGAGGAGGCAATAGGAGGTCACGGAAAGAAGTGATGACTGCAATTTGCAAATTCTTTTGCTATGCAGGAATTCCTTTTCAATCTGCAAATTCTGTTTACTTTCATAAGATGTTGGAGACAGTTGGTCAATATGGATCAGGCTTGGTTGGCCCTTCATGCCAACTTATGTCTGGTCGATTATTACAGGAGGAAGTTGCAACTATTAAGTCTTACCTGGTTGAGTTGAAGGCCTCCTGGGCAGTTACTGGTTGTTCAATTCTGGTAGACAATTGGAAAGGCTCAGATGGTAGGGCTTTTATAAACTTTTTGGTTTCTTGCCCCCGTGGTGTTTACTTTGTGTCGTCAGTTGATGCCATGGAAATAGTAGATGACCCTTCAAACTTGTTTAGAGTTCTTGATGGAGTGGTTGATGAAATTGGAGAAGAAAATGTGGTGCAGGTAATCACTGAGAATACTCCCATTTATAAAGCTGCTGGGAAAATGCTTGAGGAGAAGAGAAGAAATTTATTCTGGACTCCATGTGCAACCTATTGTGTCGATCACATGCTTGAAGATTTTTTGAAATTGAGATCCGTGGAAGACTGCATGGAAAAGTGCCAAAAAATTACCAAGTTTATTTATAATAGGAGCTGGTTGTTAAATTTTATGAAGAATGAATTCACCCAGGGACTGGAACTTCTGAGGCCTTCAGTTACTCGGAATGCCTCTAGCTTTGCTACTTTGCAGTGCTTGCTAGAACACAAAGGTAGTTTACGGAGAATGTTCGTCTCCAGTGAGTGGACTTCTAGCAGGTTTTCTAAATCTAGTGAGGGACAAGAAGTAGAGATGATTGTCTTAAATCCTTCATTTTGGAAGAAGGTGCAATATGTTTGTAAATCTGTGGAACCAGTATTGCAAGTTCTTCAAAAAGTTGATTCTGTTCAAAGCTTGTCAATTTCATCCATATATAATGATATGTACAGAGCCAAGTTTGCTATACAATCCATTCATGGTGATGATGCCAGGAAATATGGACCCTTCTGGAATGTGATAGATAACAACTGGAATTCTTTATTTTGCCACCCTTTACACATGGCTGCGTTTTTCTTAAATCCATCATACAGATATCGTCCTGATTTTGTGGCGCATTCGGAGGTGGCTCGTGGACTTAATGAATGCATAGTTCGGCTAGAGTCCGACAGTTCTAGAAGGATCTCTGCATCTATGCAGATTTCTGACTATAATTCAGCAAAGTCTGATTTTGGAACTGAGCTGGCTATTAGTACAAGAACAGAGCTTGATCCAGCTGCATGGTGGCAACAACATGGAATCAGTTGCTTAGAGCTGCAACAAATAGCTGTTCGCATACTGAGTCAGACATGTTCATCTTTGTGTTTTGAACACAACTGGACCCCATTCGCTAAAGAACATAGTCAAAGGCACAATACTTTGTCTCAGAGAAAAATGGCTGATTTGTTGTACGTCCACTACAACCTGCGACTTCGGGAACGCCAACTGAGAAAGCAATCTAATGAGTCAGTTTCTCTTGATCATATTCTTATGGAACACTTATTGGATGATTGGATTGTGGAACCCCAGAAACAAGGCATGCAAGAAGATGAGGAAATCCTTTGTCCTGGAATGGAGCCACTCGATGCATATGAGAATGATTTGATTGACTATGAGGATGGGTCATCGGATGGTCGGAAGGGTTGCCTTCAACTGGTTGGTTTGACTGATATAGACACATTGGATGTCAATCCTGCCAATGGAGGCGCTTCCACGGACAATGATGCCGATGTTAAGTTTTACGACAATGAGCTAAGTGACTAA 2703 40.84 MMAPIRTSGFVDPGWEHGVAQDEKKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCDKAPEEVYLRMRENLEGCRSNKKPRQSEDDEQSYLNFHSNDDEEDGSHVTYRNRGRQLMGNRNVGTNMTPLRSLRYVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKHAPEEVYLKIKENMKWHRTGRRHVQTDANEISAYFMQSDNEEEEEEKEESLHHISKERFIDGDKRLSKDLKSTFRGMAPGGGSEPSVKRSRLDSVFLKTTKRQTEQVQKQALVKRGGNRRSRKEVMTAICKFFCYAGIPFQSANSVYFHKMLETVGQYGSGLVGPSCQLMSGRLLQEEVATIKSYLVELKASWAVTGCSILVDNWKGSDGRAFINFLVSCPRGVYFVSSVDAMEIVDDPSNLFRVLDGVVDEIGEENVVQVITENTPIYKAAGKMLEEKRRNLFWTPCATYCVDHMLEDFLKLRSVEDCMEKCQKITKFIYNRSWLLNFMKNEFTQGLELLRPSVTRNASSFATLQCLLEHKGSLRRMFVSSEWTSSRFSKSSEGQEVEMIVLNPSFWKKVQYVCKSVEPVLQVLQKVDSVQSLSISSIYNDMYRAKFAIQSIHGDDARKYGPFWNVIDNNWNSLFCHPLHMAAFFLNPSYRYRPDFVAHSEVARGLNECIVRLESDSSRRISASMQISDYNSAKSDFGTELAISTRTELDPAAWWQQHGISCLELQQIAVRILSQTCSSLCFEHNWTPFAKEHSQRHNTLSQRKMADLLYVHYNLRLRERQLRKQSNESVSLDHILMEHLLDDWIVEPQKQGMQEDEEILCPGMEPLDAYENDLIDYEDGSSDGRKGCLQLVGLTDIDTLDVNPANGGASTDNDADVKFYDNELSD 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5670615 5678822 - MELO3C006750.2.1 Cme06g00830 329979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00830 900 Pfam hAT family C-terminal dimerisation region 719 789 IPR008906 GO:0046983
Cme06g00830 900 Pfam Protein of unknown function (DUF 659) 348 499 IPR007021 -
Cme06g00830 900 ProSiteProfiles Zinc finger BED-type profile. 9 65 IPR003656 GO:0003677
Cme06g00830 900 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 45 862 - -
Cme06g00830 900 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 12 50 - -
Cme06g00830 900 ProSiteProfiles Zinc finger BED-type profile. 133 189 IPR003656 GO:0003677
Cme06g00830 900 PANTHER OSJNBA0013A04.12 PROTEIN 12 50 - -
Cme06g00830 900 PANTHER OSJNBA0013A04.12 PROTEIN 45 862 - -
Cme06g00830 900 SUPERFAMILY Ribonuclease H-like 375 792 IPR012337 -
Cme06g00830 900 MobiDBLite consensus disorder prediction 76 106 - -
Cme06g00830 900 Pfam BED zinc finger 15 50 IPR003656 GO:0003677
Cme06g00830 900 Pfam BED zinc finger 139 174 IPR003656 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00830 - - - csv:101213851 1795.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01106 Cme-Chr3:20474845 Cme06g00830 Cme-Chr6:5670615 1.24E-15 dispersed
Cme06g00830 Cme-Chr6:5670615 Cme06g02623 Cme-Chr6:33448707 9.20E-09 dispersed
Cme06g00830 Cme-Chr6:5670615 Cme09g01671 Cme-Chr9:21406119 5.69E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g258 Blo01g00023 . . . . . . Bma05g00985 . . . Cma14g01559 . Car14g01374 . . Cpe03g01303 Bhi01g01128 . . . Hepe05g1345 . Lcy11g1304 . . . . . . . . . . . Lsi05g01387 . . Cme06g00830 . . . . Bpe05g00794 . . . . . Cmo14g01593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007263 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 4 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00830 Cme_Chr06 FPKM 32.486633 31.835234 57.40871 55.498524 45.981415 45.684052 45.372242 35.221451 33.634529 33.694103