Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00837 ATGGAGCAGAAGGGGAAATCAACTGCTGTAAAGAACTCTACTACGATGTCTTCTCGGGGTGGGCGGGTTTCTTTGAAGGCTATGGAGTCACCGAAGCGGGTGGTTTCTGTATCGGTGGTTGAATCGACGCCTCAGTCTGGTGTGAAGAAGCAAAGTTCGAGAGTTAGTAGATCTCTGACGCCGAATGCTCCTAAGAAGGGGAGGGATGGGGAGAATGTTGGAGTTTCGGCTCGAACGGTCAACCGTGGTGGTCTCAAGCAAGTTTCGCACCGGCGTTCTTTGTCTGTTGCTGGTTCTTGTGTGAATGTTGAGGATTGTAATGGAGTCAAGAGTGGATTGCAGGAGAAGCTTTATTTTGCGGAGGATTTGATTAAAGATTTGCAGTCTCAATTGGTGGAGTTGAAGGAGGAGTTGCGTAAGTCTCAGAGCTTGAACTTGGAACTTCAATCGCAGAACGATTTGCTCGTTCGTGACCTAGCCGCTGCTGAAGCGAAGTTCGCTAGTGCTAGTAATAATGACAAGAGGAAGTCAGTTTCAGAGGAATCGCAACGAAGAACCGAGGACAATCAGAAACTCGAAAATGGAAAGTTGGAGACTCAACCATCAAGTTCGTGTCGGAATGTTAGAGATTTGGACTGCAAAGCTCCACCTCCACGGGCGGCGCCGCCTCCTCCGCCGCCGCCGCTTCCTGTCCAGTCCATGCCCCGAGCAGCGGCTACACAGAAATCTCCTGACCTCGTACGCCTCTTTCACTCATTAAGAAAGAAAGAGGGGAAGAGAGATCCTCCGTTGTTGGGGAAACCAGCTGCGATCAATGCGCATAATAGCATTGTTGGGGAAATTCAGAATCGTTCTGCGCATCTTTTAGCCATAAAAGCAGATATTGAAACCAAAGGAGAGTTCATCAATGGCCTCATTGACAAGGTGCTTGTTGCAGCTCATACGGACATTGAAGATATCCTCAAGTTTGTCGATTGGCTTGATTCCCAACTTTCATCATTGGCTGACGAGCGAGCTGTGTTAAAGCATTTCAAGTGGCCTGAGAAAAAAGCTGATGCCATGCGAGAAGCTGCCATAGAATACCGTGCGCTCAAACTGTTGGAAAATGAAATCTCTTTTTACAAGGATGACACTAATTCTCCATGTGAGGCAGCCTTGAAGAAGATGGCGAGCTTGTTAGACAAGTCGGAGCGAGGCATACAACGTTTAATCACACTTCGGAGTACTGTCATGCATTCTTATCAAGACCTGAAACTCCCAACAAATTGGATGCTAGACTCCGGCATCATGAGTAAGATAAAGCAAGCTTCTATGAATCTTGCCAAGATGTACATGAAAAGGGTGAAAACAGAGCTGGATTCGGTCCGTAGTTCCGATAAAGAATCCAACCATGAATCTCTATTACTTCAGGGAATCCATTTTGCATACAGAACTCACCAGTTCGCTGGAGGGCTTGATTCAGAAACATTGTGTGCTTTTGAGGAAATAAAACAATGGGTTCCAAGACAAATGCTTGGAAGATCCCATGCTCAAGGATTGATAGTTGGCATACAATCATCATAA 1563 46.51 MEQKGKSTAVKNSTTMSSRGGRVSLKAMESPKRVVSVSVVESTPQSGVKKQSSRVSRSLTPNAPKKGRDGENVGVSARTVNRGGLKQVSHRRSLSVAGSCVNVEDCNGVKSGLQEKLYFAEDLIKDLQSQLVELKEELRKSQSLNLELQSQNDLLVRDLAAAEAKFASASNNDKRKSVSEESQRRTEDNQKLENGKLETQPSSSCRNVRDLDCKAPPPRAAPPPPPPPLPVQSMPRAAATQKSPDLVRLFHSLRKKEGKRDPPLLGKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKVLVAAHTDIEDILKFVDWLDSQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISFYKDDTNSPCEAALKKMASLLDKSERGIQRLITLRSTVMHSYQDLKLPTNWMLDSGIMSKIKQASMNLAKMYMKRVKTELDSVRSSDKESNHESLLLQGIHFAYRTHQFAGGLDSETLCAFEEIKQWVPRQMLGRSHAQGLIVGIQSS 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5706117 5711263 - MELO3C006756.2.1 Cme06g00837 329986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00837 520 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 3 518 IPR040265 -
Cme06g00837 520 MobiDBLite consensus disorder prediction 1 21 - -
Cme06g00837 520 MobiDBLite consensus disorder prediction 174 194 - -
Cme06g00837 520 MobiDBLite consensus disorder prediction 168 241 - -
Cme06g00837 520 PANTHER F11A17.16 3 518 - -
Cme06g00837 520 MobiDBLite consensus disorder prediction 36 60 - -
Cme06g00837 520 MobiDBLite consensus disorder prediction 1 86 - -
Cme06g00837 520 Coils Coil 110 165 - -
Cme06g00837 520 MobiDBLite consensus disorder prediction 216 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00837 - - - csv:101205525 946.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00837 Cme-Chr6:5706117 Cme08g00054 Cme-Chr8:426933 6.88E-94 dispersed
Cme06g00837 Cme-Chr6:5706117 Cme10g00298 Cme-Chr10:1947832 4.54E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g269 . . . . . . . . . . . . Car06g01351 . Sed12g0731 Cpe08g00129 . Bhi01g01139 Tan10g1128 Cmetu06g1150 . Hepe05g1340 . Lcy11g1300 . . . . . . . . . . . . . . Cme06g00837 . Blo07g00125 . . . . . . . Cmo06g01585 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013373 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00837 Cme_Chr06 FPKM 26.706266 29.481623 29.152134 30.037424 27.331512 29.478786 28.223505 35.726273 30.355234 31.30904