Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00839 ATGAGGTTAGGGAAGTATGAGTTGGGGAAAACTTTAGGAGAAGGGAATTTCGGGAAGGTGAAGTTGGCTGCGGATGTCCGTACCGGCTGTCGTTACGCCGTCAAGATCCTTGACAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTCAAGCTTCTTAGGCATCCGAATGTTGTTAGGCTTTATGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTCTGGAGTGCGCTTCTGGTGGAGAATTGTTTGATAGAATTGAATCGAAAGGTAAGATGGATGAAGCTGAAGGTCGAAGGATTTTCCAGCAGCTTATCGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGTCTCAGTGCTTTACCACAGAATTGCCGGGAAGATGGTTTGCTGCACACAACCTGTGGAAGTCCTAACTATGTTGCACCAGAGGTTCTTGCTAATAGAGGATATAATGGAGTCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTGTCTACCTTTCGACGAGACCAATTTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATCAGGAGAACTCTCGATCCCAATCCCAGTACTCGGATTACCATAGCAGGAATCAAAGAGAATGAGTGGTTCAAGACTGACTATAATCCTGCTTCTCCTTGTTATGATGATGATGAGGAGGAGGGTTCACTTACCGATCAGGATGATGCCATCTCAACGCCTGATGAGCCATCTGACGTTGAAAACAGCCCAGAATCTCCTTCTATTATCAATGCTTTTGAGTTAATTGGAATGTCTTCAAGTTTGGATTTATCCGGATTCTTTGAGCAAGAGGATGTCTCCGAGAGGAAGACCAGATTTACCTCGAACCATTCTGCCAAAGACTTGCTTGAGAGAATCGAGGTTATCGCAACGGATATGGGATTTCGAGTTCAAAAGAAAAGCGGAAAGTTGAAATTGATTCAAGAAATAAGAAGTCAAAAAAGCCCAAGTAATCTATCATTTGTAGCAGAGGTCTTTGAGATAAGTCCATTGCTTCATGTAGTCGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTACAGACAGTTGTGTGAAAGACTGTCAAGTGATTTGGGCACAAACCCAGAGCTCGAACGGCAAAATTCAAGCTCATTTGCATTAAACAGTACATGTTAG 1329 42.06 MRLGKYELGKTLGEGNFGKVKLAADVRTGCRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVLECASGGELFDRIESKGKMDEAEGRRIFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGVASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPSTRITIAGIKENEWFKTDYNPASPCYDDDEEEGSLTDQDDAISTPDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKTRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKLKLIQEIRSQKSPSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERLSSDLGTNPELERQNSSSFALNSTC 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5720642 5723664 + MELO3C006758.2.1 Cme06g00839 329988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00839 442 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Cme06g00839 442 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00839 442 PANTHER - 1 428 - -
Cme06g00839 442 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Cme06g00839 442 MobiDBLite consensus disorder prediction 266 303 - -
Cme06g00839 442 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00839 442 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Cme06g00839 442 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00839 442 CDD CIPK_C 308 422 - -
Cme06g00839 442 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Cme06g00839 442 PANTHER CBL-INTERACTING PROTEIN KINASE 21 1 428 - -
Cme06g00839 442 Pfam NAF domain 304 363 IPR004041 GO:0007165
Cme06g00839 442 Gene3D Kinase associated domain 1, KA1 306 424 - -
Cme06g00839 442 MobiDBLite consensus disorder prediction 284 303 - -
Cme06g00839 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00839 Cme-Chr6:5720642 Cme11g02121 Cme-Chr11:28789254 0 dispersed
Cme11g02120 Cme-Chr11:28786212 Cme06g00839 Cme-Chr6:5720642 9.98E-16 dispersed
Cme03g00650 Cme-Chr3:10943619 Cme06g00839 Cme-Chr6:5720642 1.14E-19 transposed
Cme11g02119 Cme-Chr11:28778672 Cme06g00839 Cme-Chr6:5720642 2.89E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64944 PF00069 Pkinase 2.30E-71 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00839 K07198 - csv:101205987 854.358