Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00843 ATGAGCCTTAAAATAGAGGTGTATTTGTCCTTCTCCCACAAAATTCCTAATCTCTTTCTCAAAATGTCTTCAACAGATAATCCTAATCCTCCGCTACTTCTCGACGCTCCCCTTCAATCCTTTGGATTCGAGATCCACCAAGTCTCTCCTCACAAAGTCGCCGGCCGTCTCCTCGTTTCTTCCATCTGCTGCCAGGTTGATCTATATTATATATTCCCAACTCCCTTACCTTCTAATCTCTTTCCTTCTTCTCTTCTTAATTCCTCGATTCTACTTTTATTTTGTTTTCGGAAGCCGTTCAAAGTGCTGCACGGCGGCGTATCCGCCTTGATTGCCGAGTCTCTTGCAAGTATGGGTGCTCACAAGGCGTCTGGATACCAGAGAGTCGCCGGAATTCATCTCAGTATTAATCATTTGAAGAGCGCCGCCCTCGGCGAGCTTGTTATCGCCGAAGCCGTTCCGGTCACCGTCGGTAGAACCATTCAGGTATGGGATGTACAATTATGGAAGGATTTGAAAGAACAAAAAGTAGTTGTATCCACCGCAAGAGTAACTCTTCTTTGCAATATGCCTGTTCCTAAACATGTTCAAAATGCTGCTGATGCCCTCAAGAAATTTTCAAAACTGTAA 630 44.6 MSLKIEVYLSFSHKIPNLFLKMSSTDNPNPPLLLDAPLQSFGFEIHQVSPHKVAGRLLVSSICCQVDLYYIFPTPLPSNLFPSSLLNSSILLLFCFRKPFKVLHGGVSALIAESLASMGAHKASGYQRVAGIHLSINHLKSAALGELVIAEAVPVTVGRTIQVWDVQLWKDLKEQKVVVSTARVTLLCNMPVPKHVQNAADALKKFSKL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5759977 5761758 - MELO3C006763.2.1 Cme06g00843 329992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00843 209 CDD PaaI_thioesterase 99 185 - -
Cme06g00843 209 TIGRFAM unchar_dom_1: uncharacterized domain 1 99 170 IPR003736 -
Cme06g00843 209 Pfam Thioesterase superfamily 101 171 IPR006683 -
Cme06g00843 209 Gene3D Hotdog Thioesterase 30 189 - -
Cme06g00843 209 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 23 209 - -
Cme06g00843 209 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 23 209 - -
Cme06g00843 209 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 94 186 IPR029069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00843 K19222 menI, DHNAT; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] - csv:101206950 259.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00843 Cme-Chr6:5759977 Cme06g00844 Cme-Chr6:5763770 4.96E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g274 . . . . . Bpe14g01074 . . . . . Cma14g01549 . Car14g01367 . . Cpe03g01296 . . . . . . . . . . . . . . . . . . Lsi05g01375 . . Cme06g00843 . . . . . Bpe13g00717 Bma02g00958 . . . Cmo14g01585 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001398 2 3 2 3 2 3 2 3 3 1 3 3 2 2 1 2 3 1 3 3 2 3 3 2 3 1 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00843 Cme_Chr06 FPKM 4.305344 0.0 6.165032 3.221369 4.773488 4.210711 3.681568 6.902499 5.366231 8.421208