Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00846 ATGGCCAGAGCTCCCATCCATACTCCGGCCAACTTTCTGACCTCTCGTACCCTCGAATCGTGCTACTTAGGACGCCAATGCCTCTGCTCGCCGTTTCTGAGCCAGTCTCTACGCTCAGTTTCCACAAACAAATTGGTGAGCGTCGGTGGTTGTGTAGTTGTTGGTTATGCTCGTAAATCGGTGGATTCTGCTGGAGTTTACCAGCTTACTGACGAGGATGACTTTACTGTTACTTCCTCGGAGGAATTGCGTTACGATGGAGATGAGACAGTTGATGATGAAGATACTAAGACTTCAGGAATGCGTAAAAGGATTTCTATTGGAAGCTTTGGAAGATTGAAAACTCAGAAAGTTAAGGCAATTGTGACGAAAGGTTCTAGGACAAACGAAGAATTAAGAAATGATGTCCGTAAACCAACTCCTGAAGATGGGTCACCTCATATAACTGATTATCCACGCTCTAAAGTTAAAACTATGGGAGAAAAGAAGAGGATAAATGCCTTGAGAAATGTAGAAAAAAATTCAAGACCATCTGAACAACAAGATAGAGAAAGACATCAAATAACTGCCCCCAATTTATCAAGATCCGAGCCATTAGTTTCATCAGGTTCTGGTTCTTACTTCCGAGGATGGGGGTCTAGGGGGCCCTATGGTTCTGAATACGAACCAACTGAGCGTAAACAACAGAAAATTTCCTCAGAGAAGGGTTTTTATAGCCGAAAGTCATTTAAAGACCTTGGGTGCTCTGAATATATGATTGAATCATTGAGGAGGCAAAATTTCATTAGGCCGTCACAGATTCAGGCCAAGGCATTTGCATCAGTCATTGAAGGAAAGAGTTGTATAATTTCTGATCAAAGTGGATCTGGCAAGACATTAGCATATCTTGTACCATTAATCCAGCGTCTGAGACAGGAAGAACTTGAAGGAGTTCGAAAATCTTCTTCAAAAAGTCCCCAAATTGTTATCATTGTGCCGACTGCAGAATTGGCTTCTCAGGTCTTAAGTAATTGCCGATCCATTTCAAAATTTGGCGTGCCATTTAGGTCTATGGTCGTGACAGGCGGTTTTCGGCAGAAAACTCAACTTGATAATCTACAAGAAGGTGTTGATGTTCTAATAGCAACTCCTGGTCGTTTGATGCTTCTAATAAATGAAGGCTTCTTGCTGTTATCAAATCTAAGATGTGCTGTAATGGACGAGGTAGATATCCTTTTCAATGATGAGGATTTTGAAGTTGCATTGCGGTCTTTAATGAAATCTGCTCCTGTTAACACTCAATATCTATTTGTGACTGCAACATTACCGGTTGACATATATAATACATTGGTAGAAAACTTTCCTGATTGTGAAGTGATCATGGGACCTGGAGTTCACCGAATAAGTCCTAGCCTTGAGGAGGTTCTTGTAGATTGTAGTGGTGAAGATGAGCAGAACAAGACGCCGGATGCTGCTTTCTTGAATAAGAAAGATGCCCTCTTGCAGATTGCAGAAGGAACTCCAGTCTCGAAAACTATTGTTTTCTGTAACAAGATTGAGACATGTAGAAAAGTTGAAAATGCATTGCAGCGTTTTGATAAAAAAGGTAGCCGCTTGCAAGTTTTTCCATTTCATGCTGCCCTAGCAAGAGAGTCACGGCTAGCAAATATGGAGGCATTTACCAATTCTCATTCTAACCAAGTATCCAAGTTCTTGGTTTGCACTGATAGGGCATCACGTGGAATTGATTTTCCAAATGTGGATCACGTCATACTCTTTGACTTCCCTCGTGATCCTAGCGAGTATGTTCGCCGTGTTGGGAGAACTGCCAGAGGTGCTACAGGAAAAGGAAAAGCATTCATCTTTGTGGTCGGAAAGCAGGTGCCCCTTGCACGGAGGATAATTGAAAGAAACAGGAAAGGCCACCCATTGCATGATGTGCCATCTGCTTATGAGCTTACGTACTAA 1947 42.12 MARAPIHTPANFLTSRTLESCYLGRQCLCSPFLSQSLRSVSTNKLVSVGGCVVVGYARKSVDSAGVYQLTDEDDFTVTSSEELRYDGDETVDDEDTKTSGMRKRISIGSFGRLKTQKVKAIVTKGSRTNEELRNDVRKPTPEDGSPHITDYPRSKVKTMGEKKRINALRNVEKNSRPSEQQDRERHQITAPNLSRSEPLVSSGSGSYFRGWGSRGPYGSEYEPTERKQQKISSEKGFYSRKSFKDLGCSEYMIESLRRQNFIRPSQIQAKAFASVIEGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGVRKSSSKSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLINEGFLLLSNLRCAVMDEVDILFNDEDFEVALRSLMKSAPVNTQYLFVTATLPVDIYNTLVENFPDCEVIMGPGVHRISPSLEEVLVDCSGEDEQNKTPDAAFLNKKDALLQIAEGTPVSKTIVFCNKIETCRKVENALQRFDKKGSRLQVFPFHAALARESRLANMEAFTNSHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRVGRTARGATGKGKAFIFVVGKQVPLARRIIERNRKGHPLHDVPSAYELTY 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5781047 5789479 - MELO3C006765.2.1 Cme06g00846 329995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00846 648 SMART helicmild6 516 606 IPR001650 -
Cme06g00846 648 Pfam DEAD/DEAH box helicase 266 439 IPR011545 GO:0003676|GO:0005524
Cme06g00846 648 Gene3D - 462 639 IPR027417 -
Cme06g00846 648 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 272 453 IPR014001 -
Cme06g00846 648 MobiDBLite consensus disorder prediction 124 190 - -
Cme06g00846 648 Pfam Helicase conserved C-terminal domain 490 605 IPR001650 -
Cme06g00846 648 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 241 269 IPR014014 GO:0003724
Cme06g00846 648 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 90 646 - -
Cme06g00846 648 SMART ultradead3 260 468 IPR014001 -
Cme06g00846 648 MobiDBLite consensus disorder prediction 191 207 - -
Cme06g00846 648 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 90 646 - -
Cme06g00846 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 617 IPR027417 -
Cme06g00846 648 CDD DEADc 252 453 - -
Cme06g00846 648 Gene3D - 216 453 IPR027417 -
Cme06g00846 648 MobiDBLite consensus disorder prediction 122 207 - -
Cme06g00846 648 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 648 IPR001650 -
Cme06g00846 648 CDD SF2_C_DEAD 488 616 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00846 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101214337 1236.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01063 Cme-Chr3:20007677 Cme06g00846 Cme-Chr6:5781047 8.93E-16 dispersed
Cme06g00846 Cme-Chr6:5781047 Cme04g01197 Cme-Chr4:16346959 3.59E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011458 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00846 Cme_Chr06 FPKM 8.909485 10.171372 7.102984 7.108136 9.427454 8.550889 8.340215 13.306491 12.514758 11.189022