Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00859 ATGGAGCATGGGAATTTCCTTCTAGTCTCACAAAGCCCAACGAGCCATCTCAACCCTACTCTCCATTTGGCCTCCACCCTCCTTTCCCTTGGTTCAAAAGTCACTCTTCTTATCACCAACCATGCCCTCAAAAACATCTCAAAAGACCAACTCCCCTCTGGCTTGTCTCTCTCTACTTTCTCTTACAGTTTTGACAATGGTTTTACCTACTCTGACTTCCAGCTTTGGTGTGTCGAGTTTGAGCGCCTTGGTCGCCTCGCCCTCGTCGACCTCCTATCATCCTCCTCACAACAAGGCCTTCTTCCCATCACTTGCATTGTAAATACGCTACTCATCCCTTGGGTCGCTCAGGTAGCACGTGAGTTTCATGTGTCGACTGCAGTTTTATGGATTCAATCGGTTGCTGTCTTCGATGTGTATTACTATTACTTCAATGGCTATAATGATGTTATTCGAAATGGTTATAAAGAGGATGACTCTAACTTGTTGTCATCTAACATTTGGCTTCCAGGCTTGCCTTTGATGAATTCGTTTGAGGAGAAGATGCAAATTTTTAAAGAGGAGGATAATGTCCCAATTCTTGTTAACTCTTTTGATGCATTGGAACATGATGCTTTAAGTGCGATCGGGACGTTTAACTTGATCCCAATTGGACCCTTGGTTTCGCTTCCACTTGGATGTGAAGTTTCAACCAAACAACAAAGCATATCATGTTTTCAAGATGGCCAACAGGCTCGAGAGGATTGTATCAAGTGGCTCAACTCCAAACCTGATTCGTCAGTGGTCTACATAGCATTTGGGAGCATTTCAAAGTTGTCAAAAGAACAAACAAAAGAGATAGTTGGTGCATTCTTAGAATGCAGTTACCCATTCTTGTGGTCCCTTCGCATGGATGACATCCGAGATGAGAATTTAAGCTCATATTTTAATGTTGAACTACAAGCTCAAGGGAAGATAGTGCCATGGTGCTCACAGGTAGAGATCTTGAGCCACCGATCAGTGGGTTGCTTTGTAACACACTGTGGATGGAATTTCACGATCGAGTGTGTAGCGGTTGGAGTGCCGACAGTGGCATGGCTGTTGTGGGCAGACCAAGCCACCAATGCCAAGATGATGGAGGATGTATGGAAGATTGGTGTGAGAGTGAAGAAGAGTAGTGATGGTGAAGGAATGGTAGAAAGAAAGGAGATTACAAGATGCTTGAGAATGATTATGGATATGGAAGACGATAGCAAAGGAAAAGGAAAGCAACTGAGAATCAATGCTACGAAATGGCAACGCTTAGCAATGGAGGCTGCGAATGGTTCTTCTTTTGTGAATCTTAAGGCTTTTGTAAATAAAGTTGTGCAATCCAGAAATCTCAAGAACCTTAAGATTAGTCACACACACCCAGATAGTTTCATCAAAATGCGCTTTCACAGGCTCATGGTTGAAGACTGCTTTTGCCAAAGTGGTCTTTCCAAGACCACCCATTCCCACAATAGGAATCACAGTAATCCTTTCATGAGTGGCATTATCAACAACAATGTTCACTATTCTGGATATATCAGCCCTTCTTCCTACAACTTCGAATTCATCAAGAAATGA 1587 43.04 MEHGNFLLVSQSPTSHLNPTLHLASTLLSLGSKVTLLITNHALKNISKDQLPSGLSLSTFSYSFDNGFTYSDFQLWCVEFERLGRLALVDLLSSSSQQGLLPITCIVNTLLIPWVAQVAREFHVSTAVLWIQSVAVFDVYYYYFNGYNDVIRNGYKEDDSNLLSSNIWLPGLPLMNSFEEKMQIFKEEDNVPILVNSFDALEHDALSAIGTFNLIPIGPLVSLPLGCEVSTKQQSISCFQDGQQAREDCIKWLNSKPDSSVVYIAFGSISKLSKEQTKEIVGAFLECSYPFLWSLRMDDIRDENLSSYFNVELQAQGKIVPWCSQVEILSHRSVGCFVTHCGWNFTIECVAVGVPTVAWLLWADQATNAKMMEDVWKIGVRVKKSSDGEGMVERKEITRCLRMIMDMEDDSKGKGKQLRINATKWQRLAMEAANGSSFVNLKAFVNKVVQSRNLKNLKISHTHPDSFIKMRFHRLMVEDCFCQSGLSKTTHSHNRNHSNPFMSGIINNNVHYSGYISPSSYNFEFIKK 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5877707 5883650 + MELO3C006779.2.1 Cme06g00859 330008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00859 528 CDD GT1_Gtf-like 5 406 IPR002213 GO:0008194
Cme06g00859 528 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 5 447 - -
Cme06g00859 528 Gene3D Glycogen Phosphorylase B; 233 431 - -
Cme06g00859 528 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 449 - -
Cme06g00859 528 Gene3D Glycogen Phosphorylase B; 14 441 - -
Cme06g00859 528 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 5 447 - -
Cme06g00859 528 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 248 378 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00859 - - - bhj:120081736 735.332
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g00859 Cme11g02215 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00859 Cme-Chr6:5877707 Cme11g02215 Cme-Chr11:29388679 5.20E-109 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1057 . . . . . . . . Cmo08g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00859 . . . . . . . . . . . Cma08g00870 . . . . . Bhi12g02118 . . . . . Lcy13g0890 . . . . . . . Lsi09g01617 . . Cme11g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014016 0 1 0 0 0 1 0 2 2 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00859 Cme_Chr06 FPKM 9.080724 7.686397 14.285247 13.408228 13.374473 14.165181 14.849257 21.050097 20.055305 24.053242