Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00864 ATGGAGGACGATTTCGAGTTCCCATCTGCAAGCAATGTTGATGAGGAAATGGGGTTGCCTGAGGACGAAGCTGAGAGCCCAGTTCTGAAGGTTGGCGAAGAGAAGGAAATTGGGAAGAATGGGTTGAAGAAGAAACTTGTTAAAGAAGGTGAAGGATGGGAAACTCCCGACACTGGTGACGAGGTTGAAGTGCATTATACGGGAACCCTTATTGATGGCACTCAATTTGATTCGAGCCGTGACCGAGGAACGCCTTTCAAGTTCAAGCTCGGGGAAGGCCAAGTGATTAAAGGGTGGGATGAAGGTATCAGAACAATGAAAAAGGGTGAAAATGCAATTTTCACGATACCCCCGGAATTGGCCTATGGAGAGTCCGGCTCTCCTCCAACAATTCCACCGAATGCAACTCTTCAATTTGACGTTGAGCTACTTTCATGGCATAGTGTCAAAGACATCTGTCAAGATGGAGGAATCTTGAAAAAAATCCTTGTTAAAGGAGATGGTTGGGAAAAGCCGAAGGATCTAGACGAAGTTTGGGTTCGTTATGAGGCTCGTCTTGAAAATGGTACTTTGATCTCAAAGTCTGATGGGGTCGAATTCACAGTTGAAAAGGGGTACTTCTGCCCTGCCTTGGCGACTGCTGTGAAGACGATGAAAAAGGGGGAGAAAGCTTTGTTGACTGTTAGACCACAATATGGATTTGGGGAGTCTGGTAGGCCTGTAGATGGAGAAGAAGGTGCTGTGCCTCCAAATGGTACACTTCAAATAACCCTTCAATTGGATTCTTGGAAAACTGTTACAGAGATCACAAAGGATAAGAAGGTATTGAAGAAGACCCAGAAGGAGGGAGAAGGATATGAACAGCCAAATGAGGGAGCAGTGGTGCAAGTGAAACTTACTGGTAAACTGGCTGATGGGACGATTTTTACTAAGAAGGGTGATGATGAGAAACCGTTTGAGTTTAAAATTGATGAAGAACAAGTCGTTGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAGGGAGAAATTGCATCGGTGACGATCCATCCACAATATGCTTTTGGATCTTCGGATTCATCACAAGATCTAGCTGTGGTTCCTGCAAATTCAATTGTACATTACGAAGTTGAGCTGGTTTCATTCGTCAAAGAAAAAGAATCTTGGGACTTGAACAAAGCAGAAGAGAAAATAGAAGCAGCAGGTAAAAAGAAGGAAGAGGGAAACGTTCTATTCAAAGCTGGAAAATATGAGAGAGCATCAAGAAGATATGAAAAGGCTGTTCGCTACATTGAATATGATACTTCCTTTAGTGATGAGGAGAAGCAACAGAGCAAGGCACTAAAGATTTCATGCAACCTCAACAATGCTGCTTGCAAATTGAAAGTCAAAGACTACAAACAAGCAGAGAAGCTTTGTACAAAGGTGTTGGAACTTGACAGTAGGAACGTGAAAGCTTTATATAGAAGGGCTCAAGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAAGATATCAAGAAAGCCCTTGAGATTGACCCAGATAACAGGGATGTGAAGATTGAATACAGGCAACTGAAAGAGAAAGTGAAGGAATACAACAAGAGAGATGCACAGTTTTATGGTAACATTTTTGCAAAAATGAACAAGTTGGAACATGCTAAGTCTGCTGTAAGTTACAAAACCAGATAG 1695 42.36 MEDDFEFPSASNVDEEMGLPEDEAESPVLKVGEEKEIGKNGLKKKLVKEGEGWETPDTGDEVEVHYTGTLIDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWEKPKDLDEVWVRYEARLENGTLISKSDGVEFTVEKGYFCPALATAVKTMKKGEKALLTVRPQYGFGESGRPVDGEEGAVPPNGTLQITLQLDSWKTVTEITKDKKVLKKTQKEGEGYEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKIDEEQVVEGLDLAVRKMKKGEIASVTIHPQYAFGSSDSSQDLAVVPANSIVHYEVELVSFVKEKESWDLNKAEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNKRDAQFYGNIFAKMNKLEHAKSAVSYKTR 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5912154 5915977 + MELO3C006783.2.1 Cme06g00864 330013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00864 564 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
Cme06g00864 564 SUPERFAMILY TPR-like 397 550 IPR011990 GO:0005515
Cme06g00864 564 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755
Cme06g00864 564 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755
Cme06g00864 564 Gene3D - 34 149 IPR046357 GO:0003755
Cme06g00864 564 Gene3D - 150 264 IPR046357 GO:0003755
Cme06g00864 564 MobiDBLite consensus disorder prediction 1 33 - -
Cme06g00864 564 Coils Coil 517 537 - -
Cme06g00864 564 PANTHER PEPTIDYLPROLYL ISOMERASE 383 558 - -
Cme06g00864 564 PANTHER PEPTIDYLPROLYL ISOMERASE 19 271 - -
Cme06g00864 564 PANTHER PEPTIDYLPROLYL ISOMERASE 276 383 - -
Cme06g00864 564 SUPERFAMILY FKBP-like 28 158 - -
Cme06g00864 564 Pfam Tetratricopeptide repeat 484 517 IPR001440 GO:0005515
Cme06g00864 564 SMART tpr_5 401 434 IPR019734 GO:0005515
Cme06g00864 564 SMART tpr_5 450 483 IPR019734 GO:0005515
Cme06g00864 564 SMART tpr_5 484 517 IPR019734 GO:0005515
Cme06g00864 564 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755
Cme06g00864 564 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 383 558 - -
Cme06g00864 564 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 19 271 - -
Cme06g00864 564 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 276 383 - -
Cme06g00864 564 Gene3D - 265 385 IPR046357 GO:0003755
Cme06g00864 564 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 259 IPR001179 GO:0003755
Cme06g00864 564 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755
Cme06g00864 564 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 144 IPR001179 GO:0003755
Cme06g00864 564 SUPERFAMILY FKBP-like 151 267 - -
Cme06g00864 564 Coils Coil 384 404 - -
Cme06g00864 564 MobiDBLite consensus disorder prediction 1 22 - -
Cme06g00864 564 Gene3D Tetratricopeptide repeat domain 386 544 IPR011990 GO:0005515
Cme06g00864 564 SUPERFAMILY FKBP-like 269 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00198 Cme-Chr1:1390216 Cme06g00864 Cme-Chr6:5912154 5.97E-08 dispersed
Cme01g01859 Cme-Chr1:26522536 Cme06g00864 Cme-Chr6:5912154 0 dispersed
Cme01g01860 Cme-Chr1:26529915 Cme06g00864 Cme-Chr6:5912154 2.36E-07 dispersed
Cme03g00166 Cme-Chr3:2084868 Cme06g00864 Cme-Chr6:5912154 7.11E-11 dispersed
Cme04g01539 Cme-Chr4:22171418 Cme06g00864 Cme-Chr6:5912154 2.82E-24 dispersed
Cme04g01633 Cme-Chr4:23620589 Cme06g00864 Cme-Chr6:5912154 1.12E-22 dispersed
Cme05g00055 Cme-Chr5:351437 Cme06g00864 Cme-Chr6:5912154 2.40E-15 dispersed
Cme06g00864 Cme-Chr6:5912154 Cme08g02472 Cme-Chr8:31644355 4.82E-70 dispersed
Cme08g00792 Cme-Chr8:5272832 Cme06g00864 Cme-Chr6:5912154 1.83E-14 dispersed
Cme11g02512 Cme-Chr11:31652766 Cme06g00864 Cme-Chr6:5912154 5.06E-06 dispersed
Cme12g00964 Cme-Chr12:16786675 Cme06g00864 Cme-Chr6:5912154 2.41E-09 dispersed
Cme06g00864 Cme-Chr6:5912154 Cme06g00920 Cme-Chr6:6446666 2.83E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00864 K09571 - csv:101210041 1046.57