Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00870 ATGGAGAAGGAATTCTTCATGAATGATGGTGGATGCAGTTTTTATGGGATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGGGGTTGTTGAATCCCAATTGGGAAAATTCGATGGACCATAGCGATCTCTTTGAGTCTACTTTAAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACATTATCGGCGGTGGCGGTGGCGGTGGAGATAACTTGATGATGCGAGAATTGATCGGAAGGCTGGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCCTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCCTCAAAATCTTGCCCCATTTTCGACTGACCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCCTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGTCAATTGGGGTCTAATGAAACTCAAGAATTGAGTAACAGATCAGTGGCCGGAGCTGGAGTGGAATCTGGAAAGTTATCCAGAGTTTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCCCCTCAAATGGGGGTTCAAGAAGGCGATCAAAGCCCAGTTCAAAAAGGGAATTCAATGCCAATCCCTAATAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACTCCCGAAAATGCTGGTGATTCGCGGGAGGGATCTTCGGTTTCCGAGCAGATTCCAGTTGGGGAATTGGGTTTAAAATGTAAAGCTGAAACCAACACTAGGAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGCGAAGGCTGCAGTAGAGAACCAAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAAAAAGAGATTGATGGCGCAAAAGGGAAGGCAGAGGCAAAAGCTTCAGGAGATGCAAATCAGAAACAAAACAATGATAGTTCAAAGCCTCCTGAACCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGAGGTCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGTGAGAAAATCAGCAAACGAATGAAGTTCCTTCAGGATCTCGTTCCCGGTTGCAATAAGGTAACTGGAAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTTAATCCAAGGATGGATTTTAACATGGAAACTCTTGTGCCAAAGGATATCTTCAAAGGTCCCGGTTCCTCATCGCATACGGTTTACCCTATGGATTCATCTGTACCCCAATTTGCATATGATTATCAATCTATGCACGTGCCTCCTCTTCATAGTGGCATTCCTAATGGGACAGAGAAGCAATTCGCCTCTGCAAATGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCAAACGGGTACAACGAAGTTGTCAATGGAATCCAAGTTTCAAAGTTCTGGGAAGATGAACTTCACACAGTAGTTCAAATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGGTAATATAAACAACAGAATTCATAGCTATTTGGAACAGATTAGATCATTGAACTGA 1656 42.57 MEKEFFMNDGGCSFYGMEIQPNELNSSGGLLNPNWENSMDHSDLFESTLSSIVSSPANSHIIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHPQNLAPFSTDPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSVAGAGVESGKLSRVSSNKSFNIGGIGSPQMGVQEGDQSPVQKGNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQIPVGELGLKCKAETNTRKRKSVQTGQAKDAKAAVENQNGKKIKPDEVTKKEIDGAKGKAEAKASGDANQKQNNDSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSSHTVYPMDSSVPQFAYDYQSMHVPPLHSGIPNGTEKQFASANDVMQRNLSGQMPNGYNEVVNGIQVSKFWEDELHTVVQMGYGQNQLQNANGNINNRIHSYLEQIRSLN 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5978443 5981492 + MELO3C006789.2.1 Cme06g00870 330019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00870 551 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 533 IPR024097 GO:0006355
Cme06g00870 551 Pfam Helix-loop-helix DNA-binding domain 359 406 IPR011598 GO:0046983
Cme06g00870 551 CDD bHLH_AtBPE_like 345 430 - -
Cme06g00870 551 MobiDBLite consensus disorder prediction 202 228 - -
Cme06g00870 551 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 36 533 - -
Cme06g00870 551 MobiDBLite consensus disorder prediction 202 346 - -
Cme06g00870 551 SMART finulus 361 411 IPR011598 GO:0046983
Cme06g00870 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 405 IPR011598 GO:0046983
Cme06g00870 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 425 IPR036638 GO:0046983
Cme06g00870 551 MobiDBLite consensus disorder prediction 295 321 - -
Cme06g00870 551 MobiDBLite consensus disorder prediction 272 286 - -
Cme06g00870 551 MobiDBLite consensus disorder prediction 237 259 - -
Cme06g00870 551 Gene3D - 352 426 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01389 Cme-Chr1:17299178 Cme06g00870 Cme-Chr6:5978443 2.63E-46 dispersed
Cme01g01854 Cme-Chr1:26381109 Cme06g00870 Cme-Chr6:5978443 7.50E-54 dispersed
Cme02g02101 Cme-Chr2:26811694 Cme06g00870 Cme-Chr6:5978443 1.24E-31 dispersed
Cme03g01315 Cme-Chr3:22669321 Cme06g00870 Cme-Chr6:5978443 1.27E-46 dispersed
Cme04g02213 Cme-Chr4:29332493 Cme06g00870 Cme-Chr6:5978443 3.46E-33 dispersed
Cme06g00870 Cme-Chr6:5978443 Cme10g00327 Cme-Chr10:2169290 2.35E-60 dispersed
Cme06g00870 Cme-Chr6:5978443 Cme07g00258 Cme-Chr7:1678327 2.00E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41475 PF00010 HLH 1.20E-05 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00870 - - csv:101211278 965.681