Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00875 ATGGACAAGGAAAAGCCCCAAAGCCATGGGGGAGGATTTCTGCACCAATCAAGTCGTTACTCGGGTTTTTCATCTGCTGAAAGTAGTTTCAATGGAAAATCTGAGGCAACTTCGTCTTCCATGTCATTCCCTCCATTGGCTCCGAGTACTAATTCTGATTGGGGTCAATCTGGCCGTGGATTGTCCACCGATTCCACTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGAGAAATGTTGGTCATAGGCGTGCCCATTCAGAGATCCTGACCCTCCCAGATGATATTTGTTTCGATAGTGACCTTGGTATCATTGGCGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAAATCAAGTTGGTGACTCATCCTCTCCCCTTGTAGAAGCAGCTGCAGCAACTTCTACAGATGATATTGCTGTTGGATTGAAGGAGAGACCCAGAGTTAGACATCAGCATAGCCAGTCCATGGATGGTTTGACAAACATTAAGCCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATACCAAAAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCGTTGATTGACCCCAAACGTGCCAAAAGGATATGGGCAAACAGACAGTCGGCTGCACGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAACTTGAACGGAAAGTTCAAACTTTGCAAACAGAGGCAACTTCTTTGTCTACTCAGTTGACCCTCTTACAGAGAGATGCAAATGGTATCACTGCCGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAGGTTCACCTGCAAGACGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATCTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAGTTCTATGCTCCAAACAATCAAGCAGTGCATACTTTGTTAACTGCTCAACAGTTTCAGCAACTTCAAATACAATCCCAACAGCAGCAGCAACAGCATTTTCAATACCAACAACTGCATCAGCTTCAGCAACAACAGGCTGCAGACACAAGAATGAAAGGGTCCATATCTCCTCAAAGCTCAAAAGACTCGGCATTCGACACGAAGCCGCCTACCACTTGCTGA 1233 46.07 MDKEKPQSHGGGFLHQSSRYSGFSSAESSFNGKSEATSSSMSFPPLAPSTNSDWGQSGRGLSTDSTRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSANQVGDSSSPLVEAAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYAPNNQAVHTLLTAQQFQQLQIQSQQQQQQHFQYQQLHQLQQQQAADTRMKGSISPQSSKDSAFDTKPPTTC 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6023138 6028964 - MELO3C006794.2.1 Cme06g00875 330024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00875 410 SUPERFAMILY Leucine zipper domain 223 273 IPR046347 GO:0003700|GO:0006355
Cme06g00875 410 MobiDBLite consensus disorder prediction 70 85 - -
Cme06g00875 410 MobiDBLite consensus disorder prediction 11 69 - -
Cme06g00875 410 CDD bZIP_plant_RF2 224 273 IPR044759 GO:0003700|GO:0006355
Cme06g00875 410 SMART brlzneu 219 283 IPR004827 GO:0003700|GO:0006355
Cme06g00875 410 MobiDBLite consensus disorder prediction 381 410 - -
Cme06g00875 410 Coils Coil 239 308 - -
Cme06g00875 410 MobiDBLite consensus disorder prediction 1 85 - -
Cme06g00875 410 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 284 IPR004827 GO:0003700|GO:0006355
Cme06g00875 410 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 404 - -
Cme06g00875 410 Gene3D - 222 274 - -
Cme06g00875 410 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 404 - -
Cme06g00875 410 Pfam bZIP transcription factor 223 271 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00865 Cme-Chr6:5925532 Cme06g00875 Cme-Chr6:6023138 0 dispersed
Cme06g00875 Cme-Chr6:6023138 Cme08g01412 Cme-Chr8:12259853 2.98E-112 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41476 PF00170 bZIP_1 1.00E-08 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00875 - - csv:101212010 701.434