Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00898 ATGGATACAATACAAGTTTTGGACTTTGATTATTCAAACTCTTATTATTTTCACATAGCCAACCTGTCTCCTCTTCTTCCCCTGTACTATATAATCAAACCTAAGAGATCTATCTTAGCTTCATCAAACCAAGAAATGGCTGGTCTTTCAATGGAGACAAGCCTTGTTGGAGTCTTCCTTTTTCTTCACTTCTTTCTACTATCTTCTTCAGCCTTTTCCAAGCCTGCCTCTAATGGCATTGATTGGTGGTGCAAAAAAACCACATACCCCGAAACCTGCAAGTACTTTTTCAACCATGGCACCAAGTCTCCTCCCAAAGATATGACTGACTTCAAGAAAATGGTGATCCAATTCGCCATGGAAAGAGCTCTGAGTGCCGAGAGCCATACTAAAGGTGTTGGTTCCAAGTGTCGAAATGGAAAGGAAAAGGCTGCTTGGGCTGATTGCTTGAAGCTTTACCAAAATACCATCCTTCAGCTTAACCAAACCCTTGATTCCTCTACTAAACGTACTGAGTTTGATATCCAAACCTGGCTCAGTACTGCCCTAACCAACCTTGAGACGTGCCGCACCGGGTTTGCTGAGCTTAATGTTTTGGACTATATATGGCCACTGATCATGTCAGACAATGTCACTAAGTTAATAAGTAACAGTTTGGCTATTAATAATGCTTCAGCTGCGGTGGGGAATGGGAAGGTGACATACAAAAAAGGATTTCCAAGTTGGCTTTCGGGTGGTGATAGGAGGTTACTGCAGTCGGCTTCAACAAAGGTGGACCTTGTGGTGGCTCAGGATGGATCCGGTAACTATACGACGGTAGGAGCTGCTCTTGAGGAAGCTGCAAAAAGGAAGACAAGTGGGAGATTTGTTATACAAGTAAAGAGAGGAGTTTACAGAGAAAATCTCGAGATAGGAAGTAAGATGAAGAATATAATGCTCATTGGAGATGGAATGAGATTTACCTTCATTACTGGTAATAGAAGTGTAGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGCGGCATCACATTCCAGAATACCGCTGGTCCGGAGAACCATCAAGCAGTTGCACTCCGATCTGGCGCTGATCTTTCTGTTTTCTACCGTTGTGCCTTTGAAGGGTATCAAGACACCCTTTATGTCCATTCACAAAGACAATTCTATAAGGAGTGTTATATTTACGGCACCGTAGATTTTATATTTGGCAATGCTGCAGTTGTTCTACAGAATTGCATGATTTATGCAAGGAAGCCAATGAATGGTCAGAAGAACGCAGTCACTGCTCAAGGACGGACAGATCCAAATCAAAATACTGGCATTTCAATCCACAATTCACGAGTCATGGCCACAGATGACCTAAAACCAGTGGAGAGCACAGTGAAAACCTACTTAGGAAGGCCATGGAAGGAGTACTCTCGAACAGTTTTCATGAAAACTTACATTGATAGTTTGGTTGATCCAACAGGTTGGTTGGAGTGGGATGGTGACTTCGCGTTGAATACCTTATATTATGGAGAGTATAACAACATTGGTCCTGGATCACCAATTAGCCAGCGAGTGAAGTGGAAAGGTTACCATGTTATAAGCAATTCAACAGAGGCATCAGAGTTCACCGTCCAAAATTTCATTGCAGGGCAGTCGTGGTTGCCAAACACAGAGGTCCCATTCACTCCTGGACTCTAG 1716 43.24 MDTIQVLDFDYSNSYYFHIANLSPLLPLYYIIKPKRSILASSNQEMAGLSMETSLVGVFLFLHFFLLSSSAFSKPASNGIDWWCKKTTYPETCKYFFNHGTKSPPKDMTDFKKMVIQFAMERALSAESHTKGVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTKRTEFDIQTWLSTALTNLETCRTGFAELNVLDYIWPLIMSDNVTKLISNSLAINNASAAVGNGKVTYKKGFPSWLSGGDRRLLQSASTKVDLVVAQDGSGNYTTVGAALEEAAKRKTSGRFVIQVKRGVYRENLEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFQNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYIDSLVDPTGWLEWDGDFALNTLYYGEYNNIGPGSPISQRVKWKGYHVISNSTEASEFTVQNFIAGQSWLPNTEVPFTPGL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6304129 6306623 - MELO3C006817.2.1 Cme06g00898 330047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00898 571 CDD PMEI-like_3 82 224 - -
Cme06g00898 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 223 IPR035513 -
Cme06g00898 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cme06g00898 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 223 IPR006501 GO:0004857
Cme06g00898 571 Gene3D - 253 571 IPR012334 -
Cme06g00898 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 224 IPR035513 -
Cme06g00898 571 SMART complete 293 459 IPR006633 -
Cme06g00898 571 SMART PMEI_2 75 221 IPR006501 GO:0004857
Cme06g00898 571 Pfam Pectinesterase 259 556 IPR000070 GO:0030599|GO:0042545
Cme06g00898 571 PANTHER PECTINESTERASE 56 570 - -
Cme06g00898 571 PANTHER PECTINESTERASE 56 570 - -
Cme06g00898 571 Pfam Plant invertase/pectin methylesterase inhibitor 80 221 IPR006501 GO:0004857
Cme06g00898 571 SUPERFAMILY Pectin lyase-like 256 570 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00242 Cme-Chr4:1915220 Cme06g00898 Cme-Chr6:6304129 1.03E-132 dispersed
Cme04g01402 Cme-Chr4:19874958 Cme06g00898 Cme-Chr6:6304129 1.05E-152 dispersed
Cme06g00279 Cme-Chr6:1690079 Cme06g00898 Cme-Chr6:6304129 9.64E-139 dispersed
Cme06g00898 Cme-Chr6:6304129 Cme09g01544 Cme-Chr9:20495373 0 dispersed
Cme06g02315 Cme-Chr6:30555564 Cme06g00898 Cme-Chr6:6304129 9.57E-144 dispersed
Cme11g00065 Cme-Chr11:548267 Cme06g00898 Cme-Chr6:6304129 1.56E-104 dispersed
Cme11g00066 Cme-Chr11:551946 Cme06g00898 Cme-Chr6:6304129 3.10E-109 dispersed
Cme06g00898 Cme-Chr6:6304129 Cme09g01369 Cme-Chr9:18920596 2.07E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00898 K01051 - csv:101211449 1080.47