Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00938 GCTGATTTTCCTCTCAAATGCCTGTGTTTGCTTCTGTTTTTAGACTCTTTGCTTCTTTCAAGTGCTCTTTTTCTGAAAACTTATGTTGTTCAAATGGATAGGTCCGCAATGCCGGCCTCTTTTACGAATCATTTTGAGTGGTACTCCAATGTGCTAAGCAATGTGGTTGTTGACCTTGAACGAGAAGGTAATGGTGGAGGAGGTGAAGAGAGGATCATTTATAGTTATCAGAATGTTTTCCATGGAGTTGCAGCTCGATTGAGTGAAGAAGAGGTCGAGAAGCTCGAGGAAGAAGATGGGGTTGTGGCCATTTTTCCTGAGATGAAGTACGAGCTCCATACCACCAGAAGCCCCAGATTTCTTGGGCTTGAACCAGCTGATAGCAACAGCGCCTGGTCTCAGCAAATTGCAGACCATGATGTGGTTGTTGGAGTTTTGGACACTGGGATTTGGCCGGAGAGTGACAGCTTTGACGATGCAGGAATGTCGCCGGTGCCGGCGCATTGGAAAGGGGAATGTGAAACAGGGAGAGGGTTTACGAAACAGAATTGTAACAGAAAGATCGTCGGGGCCAGAGTGTTTTACCATGGGTATCAAGCTGCAACTGGGAAATTTAACGAACAGTTGGAGTACAAGTCGCCGAGGGATCAAGATGGGCATGGAACTCACACGGCAGCTACCGTCGCTGGCTCTCCGGTGGCCGGCGCGAGTCTTCTTGGTTATGCTTATGGAACGGCTAGAGGAATGGCGCCCGGAGCTAGAATTGCGGCTTACAAGGTCTGTTGGATTGGTGGCTGTTTTAGCTCCGACATTTTGTCGGCTGTTGACAGAGCTGTGGCCGATGGAGTAAATGTTCTGTCCATCTCTTTGGGAGGTGGGGTTTCTTCGTACTATCGCGATAGTCTCTCAGTTGCAGCATTTGGGGCAATGGAGATGGGCGTGTTTGTTTCTTGCTCGGCTGGAAATGGAGGGCCGGACCCTGTCAGTCTCACGAATGTATCACCATGGATAACCACCGTCGGTGCCAGTACAATGGACAGAGATTTCCCGGCCATTGTCAAGCTCGGCGATGGCAGAACAATGAGCGGCGCTTCACTTTACAGAGGAAGAATCACAATTCCAGAAAACAAACAATTCCCAATTGTCTACATGGGGAGTAACTCGAGCAGCCCTGATCCGAGCTCGCTATGTTTAGAGGGAACTTTAGATCCCCATGTCGTCGCCGGAAAAATTGTGATATGTGATCGGGGAATTAGCCCTCGGGTCCAGAAGGGTGTGGTGGTGAAAAATGCTGGTGGGATTGGGATGATTCTGTCGAACACGGTCGCGAATGGGGAAGAACTTGTTGCCGATTGCCATTTAGTACCGGCTGTTGCCGTTGGGGAAAAAGAAGGCAAAGCAATTAAACAGTACGCATTAACGAATCGAAAAGCGACGGCGACATTAGGGTTTTTAGGGACAAGATTAGGGGTAAAACCGTCGCCGGTGGTGGCGGCGTTTTCATCTAGAGGACCAAATTTCCTCACACTTGAGATCCTAAAGCCGGATCTGGTGGCTCCTGGCGTTAACATCCTCGCCGCTTGGACCGGAAAAACAGGACCGTCGAGCTTAACGACGGACACAAGAAGGGTCAAATTCAACATTCTTTCAGGAACTTCAATGTCTTGCCCTCACGTCAGCGGCGTAGCGGCTCTAATCAAATCGAAGCATCCCGATTGGAGCCCGTCGGCGATTAAATCCGCACTGATGACCACCGCTTACATTCACGATAACACCTACAAACCTCTGCAAGACTCCTCCGCCGCATCACCGTCAAGTCCGTACGACCATGGCGCCGGCCACATAAACCCTAGAAAAGCCCTAGATCCTGGTTTGGTTTACGAAATTCAGCCGCAAGATTACTTCGACTTCCTCTGTACACAGGATTTAACCCCAACACAACTCAAAGTCTTCTCCAAATATTCAAACAGAACATGTCGTCGTCTTCTCCCCAACCCTGGAGACTTGAATTACCCGGCAATCTCCGCCGTTTTCCCTGAGAAAACCTCCGTCACTTCGCTGACCCTTCACCGAACCGTCACCAACGTCGGCCCTGCAACCTCCAGTTACCATGCGGTGGTGACTCCGTTCAAGGGCGCGGCCGTGAAAGTTGAGCCGGAGAGTCTGAATTTCACAAGAAGGTATGAAAAGCTTTCTTATAGAATCACTTTTGTGACGAAGAAGAGACTGAGTATGCCGGAATTTGGAGGGTTGATTTGGAAAGATGGAAGTCACAAAGTGAGAAGCCCCATTGTGATGACTTGGTTGTCGTTTGTTTGA 2319 49.59 ADFPLKCLCLLLFLDSLLLSSALFLKTYVVQMDRSAMPASFTNHFEWYSNVLSNVVVDLEREGNGGGGEERIIYSYQNVFHGVAARLSEEEVEKLEEEDGVVAIFPEMKYELHTTRSPRFLGLEPADSNSAWSQQIADHDVVVGVLDTGIWPESDSFDDAGMSPVPAHWKGECETGRGFTKQNCNRKIVGARVFYHGYQAATGKFNEQLEYKSPRDQDGHGTHTAATVAGSPVAGASLLGYAYGTARGMAPGARIAAYKVCWIGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYYRDSLSVAAFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTMDRDFPAIVKLGDGRTMSGASLYRGRITIPENKQFPIVYMGSNSSSPDPSSLCLEGTLDPHVVAGKIVICDRGISPRVQKGVVVKNAGGIGMILSNTVANGEELVADCHLVPAVAVGEKEGKAIKQYALTNRKATATLGFLGTRLGVKPSPVVAAFSSRGPNFLTLEILKPDLVAPGVNILAAWTGKTGPSSLTTDTRRVKFNILSGTSMSCPHVSGVAALIKSKHPDWSPSAIKSALMTTAYIHDNTYKPLQDSSAASPSSPYDHGAGHINPRKALDPGLVYEIQPQDYFDFLCTQDLTPTQLKVFSKYSNRTCRRLLPNPGDLNYPAISAVFPEKTSVTSLTLHRTVTNVGPATSSYHAVVTPFKGAAVKVEPESLNFTRRYEKLSYRITFVTKKRLSMPEFGGLIWKDGSHKVRSPIVMTWLSFV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6569971 6572641 + MELO3C006851.2.1 Cme06g00938 330087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00938 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 113 IPR037045 -
Cme06g00938 772 Pfam Subtilase family 139 592 IPR000209 GO:0006508|GO:0008236
Cme06g00938 772 Gene3D Peptidase S8/S53 domain 140 634 IPR036852 GO:0004252|GO:0006508
Cme06g00938 772 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Cme06g00938 772 PRINTS Subtilisin serine protease family (S8) signature 550 566 IPR015500 -
Cme06g00938 772 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Cme06g00938 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 551 561 IPR023828 -
Cme06g00938 772 Pfam Fibronectin type-III domain 668 765 IPR041469 -
Cme06g00938 772 Pfam PA domain 394 468 IPR003137 -
Cme06g00938 772 Gene3D - 346 490 - -
Cme06g00938 772 CDD PA_subtilisin_like 353 482 - -
Cme06g00938 772 SUPERFAMILY Subtilisin-like 112 625 IPR036852 GO:0004252|GO:0006508
Cme06g00938 772 Gene3D - 638 769 - -
Cme06g00938 772 Pfam Peptidase inhibitor I9 27 113 IPR010259 -
Cme06g00938 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 18 766 IPR045051 -
Cme06g00938 772 PANTHER XYLEM SERINE PROTEINASE 1 18 766 - -
Cme06g00938 772 CDD Peptidases_S8_3 110 587 IPR034197 -
Cme06g00938 772 ProSiteProfiles Serine proteases, subtilase domain profile. 109 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02092 Cme-Chr3:28252992 Cme06g00938 Cme-Chr6:6569971 0 dispersed
Cme06g00938 Cme-Chr6:6569971 Cme11g00387 Cme-Chr11:3917870 0 dispersed
Cme06g00938 Cme-Chr6:6569971 Cme08g00624 Cme-Chr8:4015273 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00938 - - csv:101214825 1449.88