Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00946 ATGGGAAGGGGAAAAGTAGTGCTTGAAAGAATAGAGAACAGAGTGAATCGTCAAGTGACCTTCTCAAAGAGAAGAAATGGGTTATTGAAGAAGGCTTCTGAACTCTCTGTGCTTTGTGATGTTGATGTTGCTCTCATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACTTCTGGATCAACCACCAATCTTGATGAGAGTGACATACAGATAGAGGAGGTGTCAAAGCTGAGAGCTAAATATGAATCTCTTCAACGTTCCTATAGGAATTTTCTTGGAGAAGAACTTGAACCATTGAGCTTAAAAGAGTTGCATAATCTTGAAAAACAGTTGGACAAAACTCTTTCACAAGCCAGACAGCGGAAGGCTGAAATAATGCTTCAAAAATTAGCAGACTTACACAAAATGGAGCAGGACCTTGGAGATCAAAATAATCAGCTCAAGTCAAAGAATATAATACCAAACAAAAGTTCTTTGCGTGCAACACAGCTCGAAAAAGATCAAGACCAACAATGTGTGCAAGAACAGGAAGGTGGTGAGGAAGATCCAAAGAATTACGAAGTTGTAAGAGCTGATGACCCAAACATGGTCAACACCACCAGGTATTATGCATATTCAAACCTAGCCAAGATGATTAGTTTTGGGTTTGGTCTGTTTGAGTTTTAA 720 39.58 MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGSTDMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLKELHNLEKQLDKTLSQARQRKAEIMLQKLADLHKMEQDLGDQNNQLKSKNIIPNKSSLRATQLEKDQDQQCVQEQEGGEEDPKNYEVVRADDPNMVNTTRYYAYSNLAKMISFGFGLFEF 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6703218 6707162 + MELO3C031794.2.1 Cme06g00946 330095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00946 239 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Cme06g00946 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme06g00946 239 Coils Coil 119 142 - -
Cme06g00946 239 Coils Coil 92 112 - -
Cme06g00946 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme06g00946 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cme06g00946 239 MobiDBLite consensus disorder prediction 188 205 - -
Cme06g00946 239 Pfam K-box region 89 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme06g00946 239 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme06g00946 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme06g00946 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme06g00946 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme06g00946 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 - -
Cme06g00946 239 MobiDBLite consensus disorder prediction 181 205 - -
Cme06g00946 239 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 186 - -
Cme06g00946 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cme06g00946 239 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Cme06g00946 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00946 Cme-Chr6:6703218 Cme11g02324 Cme-Chr11:30303986 4.77E-55 dispersed
Cme11g02532 Cme-Chr11:31767647 Cme06g00946 Cme-Chr6:6703218 6.64E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41480 PF01486 K-box 6.90E-23 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00946 K09264 - csv:101212022 370.933