Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00949 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGCGTAGAAATGGAGTATTGAAGAAGGCTTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCTGTCATTATTTTCTCACAGAAAGGCCGTCTCTATGAATTTGCAAGCTCTGAGATGCCAAAGATTATGGACCGCTATCGCAAATGTACCATAGATGCCAACAACAATAACACTAAATTTGATAGACAACTTCAGTTACAGCAATCAAGGCTTGAAGCTGAAAGCATTAATAAGAAGATGGAGTTGATGCAACTTTCTCACGGGAAGCTGTTGGGATATGGACTGGATAATTGTTCCCTTGATGAACTTCAAGTACTTGATGCTCAGCTTCAACGAAGCCTCTTCCAAATTAGGGCTAGAAAGGCTCAGCTATACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAAACTCCTTTGGGAAGAAAACAGGATTTTGTCTTTAAAGGCTGCAGCTAAAGGTGGTGCCGCAACGCACGGCTGCCGGAGTAGCAGCTCAAGTTTGGTAGACACCCAATTGTCAATTTGA 597 41.04 MVRGKVEMKRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPKIMDRYRKCTIDANNNNTKFDRQLQLQQSRLEAESINKKMELMQLSHGKLLGYGLDNCSLDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKEKLLWEENRILSLKAAAKGGAATHGCRSSSSSLVDTQLSI 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6728550 6737231 - MELO3C006860.2.1 Cme06g00949 330098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00949 198 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Cme06g00949 198 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Cme06g00949 198 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme06g00949 198 PANTHER MADS BOX PROTEIN 1 176 - -
Cme06g00949 198 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Cme06g00949 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme06g00949 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme06g00949 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme06g00949 198 MobiDBLite consensus disorder prediction 182 198 - -
Cme06g00949 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme06g00949 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme06g00949 198 MobiDBLite consensus disorder prediction 179 198 - -
Cme06g00949 198 PANTHER MADS-BOX PROTEIN SOC1 1 176 - -
Cme06g00949 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme06g00949 198 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme06g00949 198 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00949 Cme09g01472 CCT
Cme06g00949 Cme09g01472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00949 Cme-Chr6:6728550 Cme11g02531 Cme-Chr11:31756996 6.06E-58 dispersed
Cme08g01507 Cme-Chr8:14420850 Cme06g00949 Cme-Chr6:6728550 1.38E-40 transposed
Cme06g00227 Cme-Chr6:1373704 Cme06g00949 Cme-Chr6:6728550 9.17E-58 wgd
Cme06g00949 Cme-Chr6:6728550 Cme09g01706 Cme-Chr9:21690768 1.86E-53 wgd
Cme06g00949 Cme-Chr6:6728550 Cme09g01472 Cme-Chr9:19925518 3.36E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41481 PF01486 K-box 7.40E-19 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00949 - - csv:101211542 312.383