Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g00949 | ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGCGTAGAAATGGAGTATTGAAGAAGGCTTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCTGTCATTATTTTCTCACAGAAAGGCCGTCTCTATGAATTTGCAAGCTCTGAGATGCCAAAGATTATGGACCGCTATCGCAAATGTACCATAGATGCCAACAACAATAACACTAAATTTGATAGACAACTTCAGTTACAGCAATCAAGGCTTGAAGCTGAAAGCATTAATAAGAAGATGGAGTTGATGCAACTTTCTCACGGGAAGCTGTTGGGATATGGACTGGATAATTGTTCCCTTGATGAACTTCAAGTACTTGATGCTCAGCTTCAACGAAGCCTCTTCCAAATTAGGGCTAGAAAGGCTCAGCTATACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAAACTCCTTTGGGAAGAAAACAGGATTTTGTCTTTAAAGGCTGCAGCTAAAGGTGGTGCCGCAACGCACGGCTGCCGGAGTAGCAGCTCAAGTTTGGTAGACACCCAATTGTCAATTTGA | 597 | 41.04 | MVRGKVEMKRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPKIMDRYRKCTIDANNNNTKFDRQLQLQQSRLEAESINKKMELMQLSHGKLLGYGLDNCSLDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKEKLLWEENRILSLKAAAKGGAATHGCRSSSSSLVDTQLSI | 198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6728550 | 6737231 | - | MELO3C006860.2.1 | Cme06g00949 | 330098 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g00949 | 198 | CDD | MADS_MEF2_like | 3 | 73 | IPR033896 | GO:0000977|GO:0045944 | |
Cme06g00949 | 198 | Gene3D | - | 14 | 94 | IPR036879 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | Pfam | K-box region | 87 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme06g00949 | 198 | PANTHER | MADS BOX PROTEIN | 1 | 176 | - | - | |
Cme06g00949 | 198 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | MobiDBLite | consensus disorder prediction | 182 | 198 | - | - | |
Cme06g00949 | 198 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | MobiDBLite | consensus disorder prediction | 179 | 198 | - | - | |
Cme06g00949 | 198 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 176 | - | - | |
Cme06g00949 | 198 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cme06g00949 | 198 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme06g00949 | 198 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme06g00949 | Cme09g01472 | CCT | |
Cme06g00949 | Cme09g01472 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00949 | Cme-Chr6:6728550 | Cme11g02531 | Cme-Chr11:31756996 | 6.06E-58 | dispersed | |
Cme08g01507 | Cme-Chr8:14420850 | Cme06g00949 | Cme-Chr6:6728550 | 1.38E-40 | transposed | |
Cme06g00227 | Cme-Chr6:1373704 | Cme06g00949 | Cme-Chr6:6728550 | 9.17E-58 | wgd | |
Cme06g00949 | Cme-Chr6:6728550 | Cme09g01706 | Cme-Chr9:21690768 | 1.86E-53 | wgd | |
Cme06g00949 | Cme-Chr6:6728550 | Cme09g01472 | Cme-Chr9:19925518 | 3.36E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41481 | PF01486 | K-box | 7.40E-19 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g00949 | - | - | csv:101211542 | 312.383 |