Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00959 ATGGATTCTTTTTCAAATTTTTATGAAGAGTATTTCTCCAGTTCCGAGAGTAGTAACTGCCGTCGCCCCATTTTCTCCGATGAGGATTTTATGTTGGCGGCGAGTAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCATCCAGTATACAGAGGAGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGTACTTTTCCAACGGCGGAGATGGCCGCTCGAGCTCACGACGTCGCCGCCATCGCCCTTAGAGGTCTTACTGCTTGTCTCAATTTCGCCGACTCTGCGTGGCGATTGCCTGTGCCGGCGTCTACTGACGCCAGAGATATCCAGAAGGCGGCAGCGGAGGCGGCGGAGGCATTCCGGCCGGCAGAGTCAGATGGGTCTTCGGTAGATGACTCAAGGACGGAAAATGGGATGATGGCGGAGACGACGACGCCGGAAAACGTGTTTTACATGGATGAGGAGGCAGTTTTCGGAATGCCTGGATTGTTGGAGGATATGGCTGCGGGAATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTACTCTGACGTGTCCTTATGGAGCTATTAA 639 51.96 MDSFSNFYEEYFSSSESSNCRRPIFSDEDFMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASTDARDIQKAAAEAAEAFRPAESDGSSVDDSRTENGMMAETTTPENVFYMDEEAVFGMPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6823248 6823886 - MELO3C006869.2.1 Cme06g00959 330108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00959 212 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Cme06g00959 212 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Cme06g00959 212 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Cme06g00959 212 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 14 212 - -
Cme06g00959 212 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Cme06g00959 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 212 IPR045277 GO:0003700
Cme06g00959 212 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Cme06g00959 212 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Cme06g00959 212 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Cme06g00959 212 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00959 Cme09g01446 CCT
Cme06g00959 Cme09g01446 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00959 Cme-Chr6:6823248 Cme08g01225 Cme-Chr8:8651739 4.81E-39 dispersed
Cme11g02291 Cme-Chr11:29999599 Cme06g00959 Cme-Chr6:6823248 1.35E-30 dispersed
Cme06g00959 Cme-Chr6:6823248 Cme06g00960 Cme-Chr6:6836964 2.03E-34 tandem
Cme06g02698 Cme-Chr6:34179875 Cme06g00959 Cme-Chr6:6823248 2.16E-42 transposed
Cme09g01446 Cme-Chr9:19673450 Cme06g00959 Cme-Chr6:6823248 4.62E-79 transposed
Cme06g00959 Cme-Chr6:6823248 Cme09g01717 Cme-Chr9:21805168 4.14E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41483 PF00847 AP2 1.30E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00959 - K09286 csv:101220749 393.66