Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00960 ATGTCTGATAATAATAATAATAATAATTCCCCCCTCCCTCCCGGTCGCCACCGCATCTTCCGCGGTATCCGTTCCCGTTCCGGCAAATGGGTCTCTGAAATTCGGGAGCCACGTAAGGCTACTCGTATTTGGCTTGGAACTTACCCAACTCCCGAAATGGCTGCCGCCGCCTACGACGTCGCCGCTCTCACTCTCAAAGGCCCTAATGCTTCCCTTAATTTCCCTCATTCTCTTTTATCTTATCCCATTCCTCCTTCCACTTCCCCTTCTGACATTCGCGCCGCCGCTGCCATTGCTGCCGCCGCCAGAAACCCCAATAACACTAGCCCACAAGCTTCTCCTGCTGCTGCTACTACTATTACTGCTACAACTACTGAATATTCTTCTGTGACTGAGGCGATCGATGGAGGTGGGCCGTCCTCCCATGCGACGGGGGATTGTTCCGGCAAGTTTGTGGACGAGGAAGAGTTATTGAACATGCCGAATTTACTTGTGGATATGGCGGAGGGAATGCTGGTGAGTCCACCAAGGATGAAGTCGCCGTCTTCCGATGACAATTCTCCCAACCATTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 609 51.23 MSDNNNNNNSPLPPGRHRIFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALTLKGPNASLNFPHSLLSYPIPPSTSPSDIRAAAAIAAAARNPNNTSPQASPAAATTITATTTEYSSVTEAIDGGGPSSHATGDCSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDNSPNHSQGDDGLWSYSK 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6836964 6837931 - MELO3C006870.2.1 Cme06g00960 330109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00960 202 SMART rav1_2 19 81 IPR001471 GO:0003700|GO:0006355
Cme06g00960 202 Pfam AP2 domain 21 67 IPR001471 GO:0003700|GO:0006355
Cme06g00960 202 ProSiteProfiles AP2/ERF domain profile. 19 75 IPR001471 GO:0003700|GO:0006355
Cme06g00960 202 MobiDBLite consensus disorder prediction 179 202 - -
Cme06g00960 202 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cme06g00960 202 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Cme06g00960 202 MobiDBLite consensus disorder prediction 169 202 - -
Cme06g00960 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 10 200 - -
Cme06g00960 202 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Cme06g00960 202 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Cme06g00960 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 200 - -
Cme06g00960 202 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00960 Cme09g01717 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00960 Cme-Chr6:6836964 Cme06g02698 Cme-Chr6:34179875 2.58E-49 dispersed
Cme06g00959 Cme-Chr6:6823248 Cme06g00960 Cme-Chr6:6836964 2.03E-34 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41484 PF00847 AP2 7.40E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00960 - - cmo:103484042 347.436