Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00978 ATGCCTGGTGGTGCAATTACTGATCCCAGCTTTCTACCTTACCCAATTCCCAGTTCAATGCCTAGTTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGATGGTTATGGAGAAGTATGTTTGCTTGGAGATGGCTTTGATCCTATTGGAATTGTGAGGATAAGGGAAGATGAATATGATAGCAGATCCGGCAGTGACAATATCGATGGCGCTGTATCGGGGGATGATCACGATGCTAATGATGAACAACCACCGAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAGTGTCCTCATCCCGATGATAAACAAAGAAATGAGCTCAGTAGAAGACTTGGTTTGGAGACAAAGCAAGTGAAATTTTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATAGAACGACACGAGAATGCAATTCTTAAGCAAGAAAATGATAAGCTCCGGGCTGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGTAGTACTTGTGGGGGCCCTTCGATTCCTGTTCAATTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGAGGAACTACATCGATTATATGCTGTCACCAACAAGTTCTTGGGATGGCCGGTTGTGCCGTTTGTCAATCATGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCTGTAGGAAGAAACGGACCCGGAAATTTGAGTACAGTTTCTGATTCTATGGGGCTTAACTTGGGAAACGGACTTTTCAGTGCTGGCCCTGTGATGCCTATTAGTAAGCCTGACATAGGCATGCTAAGCAATGATATACCACTTGAGAGAACAATATATGTGGATCTAGCTTTGGCAGCTATGAATGAATTGGTTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAGAACTCAGGACGACAGTAGCAAAGCGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGTATAAAGCACACTACTTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTTGAGACATTGATGGACGCAAACCGGTGGGCAGAAATGTTTCCTTGTTTGATTGCTCGAGCTACTACAATCGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAGCTGCGAGTGCTTTCCCCGCTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCCAATTCAAACTCATTTTTCGGTTGCAGGAGACTTCCTTCGGGCTGTGTTGTGCAAGATATGCCCAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACGGTTATACACCAGCTTTACCGCCAGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTGGCTACTCTTCAAAGGCAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCCACCGAAGATCCTGCAGGAATATCACCATCTGGTAGGAGAAGTATGCTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGTAGTTCAACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGTATCAACGATCCTGGTGAGCCACCCGGTATTGTGTTGAGTGCTGCAACTTCGGTTTGGATGCCAGTAACTCAACAGAGGTTGTTTGAATTCTTGCAAGATGAGTGCTTACGAAGTGAGTGGGATATTTTATCCAACAGCCGGCCAATGCTAGAAATGCTCCGTATCTCGAAAGGCCAGGGACCGGATAACCGTGTTTCTCTACTGTGTGCTAATCCCATGAACGCTAATGAGAACACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCACTGGTTGTTTTCGCTCCAGTCGACACATCATCAGTTAATTTGGTAATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCATTGATCAATCCAACTATGCATGTACAAACGACCAAGATGCATCAGTCAAGTCAAGCCTTAACAGTGGCCATGGTGGTGCATGTCTCCTCACAGTTGCATTCCAGATTTTGGTCAATAGCCTTCCAACTGCCAAACTCACTGTTGAGTCGGTTGAGACAGTTAACCATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAGTATCGTAA 2352 44.39 MPGGAITDPSFLPYPIPSSMPSSSEFSSSLRKMDGYGEVCLLGDGFDPIGIVRIREDEYDSRSGSDNIDGAVSGDDHDANDEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRNELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCSTCGGPSIPVQLSFEEHQLRIENARLREELHRLYAVTNKFLGWPVVPFVNHGSSPSSDSCLELSVGRNGPGNLSTVSDSMGLNLGNGLFSAGPVMPISKPDIGMLSNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRTQDDSSKATLNLDEYSRTFPSSAGIKHTTWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPTEDPAGISPSGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFEFLQDECLRSEWDILSNSRPMLEMLRISKGQGPDNRVSLLCANPMNANENTMFILQETWTDVSGSLVVFAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPIDQSNYACTNDQDASVKSSLNSGHGGACLLTVAFQILVNSLPTAKLTVESVETVNHLISCTIQKIKTALQVS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6946483 6952624 + MELO3C006887.2.1 Cme06g00978 330127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00978 783 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 37 781 IPR042160 -
Cme06g00978 783 ProSiteProfiles START domain profile. 285 519 IPR002913 GO:0008289
Cme06g00978 783 MobiDBLite consensus disorder prediction 57 94 - -
Cme06g00978 783 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Cme06g00978 783 Gene3D - 73 160 - -
Cme06g00978 783 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Cme06g00978 783 Coils Coil 138 170 - -
Cme06g00978 783 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Cme06g00978 783 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 37 781 - -
Cme06g00978 783 SUPERFAMILY Bet v1-like 286 516 - -
Cme06g00978 783 SMART HOX_1 86 148 IPR001356 GO:0003677
Cme06g00978 783 CDD START_ArGLABRA2_like 294 514 - -
Cme06g00978 783 Pfam START domain 295 515 IPR002913 GO:0008289
Cme06g00978 783 SUPERFAMILY Bet v1-like 544 777 - -
Cme06g00978 783 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Cme06g00978 783 SMART START_1 294 516 IPR002913 GO:0008289
Cme06g00978 783 CDD homeodomain 87 144 IPR001356 GO:0003677
Cme06g00978 783 MobiDBLite consensus disorder prediction 71 88 - -
Cme06g00978 783 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00978 Cme-Chr6:6946483 Cme11g00781 Cme-Chr11:9888700 0 dispersed
Cme11g02549 Cme-Chr11:31886646 Cme06g00978 Cme-Chr6:6946483 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41487 PF01852 START 7.70E-47 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00978 K09338 - csv:101218216 1504.19