Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00979 ATGTCAAGGAGCAGTAGTAACAGTAGTATAATAGAGCCATTAATAGTGGGAAAAGTAGTAGGAGATGTGGTTGATAATTTCGTTCCAAATGTGAAAATGAATGTTATTTACAATTCCTCTAAACAAGTCGCCAATGGCCACGAGCTTCTCCCTTGTCTTATCTCCTCTAAACCTCGTGTTGAAGTTGCCGGTGACGACATGAGATCAGCTTTCACTTTGATTATGATCGACCCAGATGCTCCAAGCCCAAGTGATCCTTATCTGAGGGAATACCTTCACTGGATGGTAACGGACATTCCTGGTACCACTGATGCTTCTTTTGGGAAGGAGATAATGAGTTACGAGAGTCCAAAGCCACATATTGGGATTCATCGTTACGTGTTTGTGTTGTTCAAGCAACGAGGGAGACAGACGGTGAGATTGTCCTCCTCCTCCTCCTCCTCCTCTTCAAGAGCCAATTTTAATACTAGAAACTTCTCTGAAGCCAATGGCCTGGGCCTCCCCGTTGCCGCTGTTTATTTCAATGCTCAAAGAGAAACTGCCGCTAGAAGAAAATGA 558 44.09 MSRSSSNSSIIEPLIVGKVVGDVVDNFVPNVKMNVIYNSSKQVANGHELLPCLISSKPRVEVAGDDMRSAFTLIMIDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKEIMSYESPKPHIGIHRYVFVLFKQRGRQTVRLSSSSSSSSSRANFNTRNFSEANGLGLPVAAVYFNAQRETAARRK 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6955905 6957126 - MELO3C006888.2.1 Cme06g00979 330128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00979 185 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 9 184 IPR035810 -
Cme06g00979 185 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 71 93 IPR001858 -
Cme06g00979 185 Gene3D - 6 185 IPR036610 -
Cme06g00979 185 CDD PEBP_euk 31 176 IPR035810 -
Cme06g00979 185 Pfam Phosphatidylethanolamine-binding protein 58 174 IPR008914 -
Cme06g00979 185 SUPERFAMILY PEBP-like 18 179 IPR036610 -
Cme06g00979 185 PANTHER CEN-LIKE PROTEIN 1 9 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00979 K06910 PEBP, TFS1; phosphatidylethanolamine-binding protein - csv:101218688 332.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00868 Cme-Chr2:11567381 Cme06g00979 Cme-Chr6:6955905 1.47E-63 dispersed
Cme04g02238 Cme-Chr4:29525685 Cme06g00979 Cme-Chr6:6955905 1.28E-47 dispersed
Cme04g02405 Cme-Chr4:30718395 Cme06g00979 Cme-Chr6:6955905 3.59E-60 dispersed
Cme06g00979 Cme-Chr6:6955905 Cme11g01915 Cme-Chr11:27265666 2.13E-35 dispersed
Cme06g00979 Cme-Chr6:6955905 Cme08g01203 Cme-Chr8:8484521 4.12E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g618 . . Bda05g00059 . Bpe03g00295 . Bma10g01214 . Cmo16g00145 . . . . . Sed07g1050 . Cpe14g00117 Bhi01g01345 Tan01g0271 Cmetu06g0928 . Hepe07g0175 Mch10g0171 . . . . . . . . . . . . Lsi05g01247 . . Cme06g00979 Blo07g00420 . . . . . . . . . . Cma16g00139 . Car16g00123 . . . . . . . . . . Cla05g00863 Cam05g0950 Cec05g0955 Cco05g0955 Clacu05g0937 Cmu05g0895 Cre05g0979 . Csa03g01693 Chy06g00927 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000405 2 8 2 3 3 4 5 4 4 4 4 4 5 4 3 4 4 8 5 4 4 5 4 4 3 4 4 5 5 3 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00979 Cme_Chr06 FPKM 4.791254 4.215365 4.881184 5.028906 3.236635 3.270161 3.349896 4.564926 3.721987 4.669815
Cme06g00979 Cme_Chr00 FPKM 5.034172 4.73065 7.610101 7.529336 4.831124 4.783007 4.846519 6.733361 5.276551 7.129229