Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00980 ATGGGTATGGAGTTGAAACGCTTCTTTTTTATTTTCATCCTCTGCTTCGAGCTCTGCATTTTGAGTTCCAATGGCGCTACAGTCCAGAATGAGATTTTTATCGAGAGAGAAAGCTTGGTTTCTTTCAAAGCTTCGTTAGAGACCCCTGAAATTCTGCCATGGAACTCATCGCTTCCTCACTGCTTTTGGGTCGGAGTTTCTTGTCGACTCGGTCGAGTTACAGAGCTCTCTCTTTCGTCTCTTTCACTCAAAGGCCAATTATCTCGGTCCCTTTTCAATCTTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTACTCTCTGGCTCAATCCCACCTCAGATATCTAATCTTCGGAGCTTGAAGGTTCTTGCTCTCGGTGAAAATCAGTTCTCCGGCCACTTCCCTATCGAGCTCACTGAGTTGACTCAGCTGGAGAATCTCAAGTTGCGGGCTAATTTATTCTCAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACTCTTGACCTCTCCAGCAATGCCTTCGTCGGAAATGTCCCGCCCCACATCGGAAACTTGACGAAGATTTTATCCTTGGACCTCGGCAACAATCTTTTATCAGGTTCACTCCCATTGACCATCTTTACTGAGCTTACATCTTTAACTTCTCTGGACATTTCAAACAACTCCTTTTCGGGTTCAATCCCACCTGAAATTGGTAATCTAAAGCATTTGGCTGGCCTTTATATCGGCATTAACCATTTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCGTCTTGTTCTCTAACTGGTCCATTGCCCGATGAACTGTCCAAGCTGAAATCATTGAGCAAACTGGATCTTTCATACAACCCACTTGGGTGTTCAATCCCGAAAATGATTGGTGAATTGCAGAACTTAACTATATTGAATTTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAGCTTGGGAGGTGTAAAAATTTGAAAACATTGATGCTTTCGTTCAACTATCTATCTGGGGTGTTGCCACCAGAGCTTTCTGAGCTTTCCATGTTGACATTTTCCGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCTTGGTTTGGAAAATGGGATCATGTCGATTCTATTTTACTCTCGAGTAATCGATTTACCGGCGAAATCCCACCTGAGATTGGAAATTGTTCGAAGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATATGTAATGCTGCATCCTTGATGGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACTATTGATGACACATTTGTGATGTGTAAAAACCTTACACAGTTGGTTTTGGTCGACAATCAGATCGTCGGTTCAATACCGGAGTACTTCTCAGACCTTCCCCTACTGGTTATCAACCTTGACGCCAACAACTTTACAGGTTCTTTACCAAGAAGTATATGGAACTCGGTGGATTTGATGGAATTTTCCGCTGCAAATAACCAGTTAGAGGGTCATCTCCCTCCAGAAACTGGTTATGCAGCTTCCCTTGAGAGGCTTGTTCTCAGCAACAACAGGTTGACAGGCATAATACCAGATGAAATTGGAAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGCACTTACCACATTGGACCTTGGAAACAACAGTTTAAGCGGATCGATTCCAGAAAAACTTGCAGACCTTTCTGAATTACAGTGCTTAGTTCTTTCACACAACAATTTATCTGGAGCAATACCATCCAAGCCATCAGCTTATTTTCGACAGTTGACGATTCCAGATTTGAGCTTTGTTCAGCATCATGGAGTTTTCGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGATGAACTGGGGAACTGTGTTGTAGTGGTGGATCTTTTACTCAACAATAATCTCCTTTCTGGAGCAATTCCTAGTTCTCTCTCTCAGTTAACAAACCTCACAACCTTGGATCTATCTAGCAACACGCTTACTGGTCCTATTCCTGCAGAGATTGGCAATGCACTCAAGCTCCAAGGCCTGTATCTTGGGAATAATCACCTTATGGGAATGATCCCAGAAAGCTTCAGTCATTTGAATAGCTTGGTAAAGTTGAACCTAACTGGTAATAAATTATCTGGTTCGGTTCCGAAAACGTTTGGTGGTTTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAGCATGTTGAATCTTGTGGGGCTTTATGTACAGGAGAACAGACTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGTCCTGGAAGATTGAAACTTTGAATTTGAGTGATAATTATTTAGAGGGTGTACTTCCACGAACATTGGGCAACCTATCATACTTGACGACTTTGGACCTTCATGGAAATAAGTTCGCAGGGACAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACTTAGATGTTTCGAACAACAGCCTTTCAGGGGAGATTCCAGAGAAAATATGCAGCCTCGTCAATATGTTTTACCTGAATTTGGCTGAAAACAGTCTTGAAGGTCCAATTCCGAGAAGTGGGATTTGCCAGAATCTATCCAAAAGTTCACTTGTCGGTAACAAGGATCTTTGTGGGAGAATCCTGGGTTTCAATTGCCGGATCAAAAGCTTAGAGAGATCTGCAGTCTTGAATTCTTGGAGTGTTGCTGGGATTATCATTGTTAGCGTTCTTATCGTTCTAACTGTGGCATTCGCAATGCGAAGACGGATCATTAGAAGCCAGAGAGATAGTGATCCTGAGGAAATGGAGGAAAGTAAATTAAACAGTTTCATAGATCCCAATCTTTATTTCTTAAGCAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCTATGTTCGAGCAGCCCCTTCTGAAGTTAACTTTGGTTGATATCCTGGAAGCAACCAATAACTTCTGTAAAACTAACATTATTGGAGATGGAGGATTCGGGACCGTTTACAAGGCAACTTTACCTGATGGAAAAGTTGTTGCTGTGAAGAAGCTAAGCGAAGCGAAAACACAAGGGCATAGAGAATTTATTGCTGAAATGGAAACTATAGGCAAAGTGAAGCACCATAATCTTGTTCCACTGCTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTCCTCGTGTATGAGTATATGGTGAATGGTAGCTTAGATCTTTGGCTGAGAAACCGAACCGGTACTCTCGAAATCCTCAACTGGGAGACTCGCTTCAAAGTTGCTTCAGGTGCAGCCCGTGGACTGGCATTTCTTCACCATGGATTCATTCCCCACATCATTCATAGAGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTAGCAAGATTGATCAGTGCTTGTGAAACTCATGTCACAACTGAGATTGCTGGAACGTTTGGTTACATCCCGCCGGAGTACGGGCAGAGTGGGAGGTCGACAACAAAAGGTGATGTATATAGCTTCGGTGTGATTCTACTGGAATTGGTAACTGGGAAGGAACCAACTGGACCTGACTTTAAAGAGATTGAGGGTGGAAATCTAGTTGGTTGGGTGTTTCAGAAGATCAACAAGGGCCAAGCTGCAGATGTTCTTGATGCCACGGTTCTGAATGCTGACTCAAAGCATATGATGCTTCAAACCCTTCAGATTGCCTGTGTTTGCTTGTCAGAAAATCCTGCTAATAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3903 42.53 MGMELKRFFFIFILCFELCILSSNGATVQNEIFIERESLVSFKASLETPEILPWNSSLPHCFWVGVSCRLGRVTELSLSSLSLKGQLSRSLFNLLSLSVLDLSNNLLSGSIPPQISNLRSLKVLALGENQFSGHFPIELTELTQLENLKLRANLFSGKIPPELGNLKQLRTLDLSSNAFVGNVPPHIGNLTKILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLAGLYIGINHFSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKMIGELQNLTILNLVYTELNGSIPAELGRCKNLKTLMLSFNYLSGVLPPELSELSMLTFSAERNQLSGPLPSWFGKWDHVDSILLSSNRFTGEIPPEIGNCSKLNHLSLSNNLLTGPIPKEICNAASLMEIDLDSNFLSGTIDDTFVMCKNLTQLVLVDNQIVGSIPEYFSDLPLLVINLDANNFTGSLPRSIWNSVDLMEFSAANNQLEGHLPPETGYAASLERLVLSNNRLTGIIPDEIGNLTALSVLNLNSNLLEGTIPAMLGDCSALTTLDLGNNSLSGSIPEKLADLSELQCLVLSHNNLSGAIPSKPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPSSLSQLTNLTTLDLSSNTLTGPIPAEIGNALKLQGLYLGNNHLMGMIPESFSHLNSLVKLNLTGNKLSGSVPKTFGGLKALTHLDLSCNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMSWKIETLNLSDNYLEGVLPRTLGNLSYLTTLDLHGNKFAGTIPSDLGDLMQLEYLDVSNNSLSGEIPEKICSLVNMFYLNLAENSLEGPIPRSGICQNLSKSSLVGNKDLCGRILGFNCRIKSLERSAVLNSWSVAGIIIVSVLIVLTVAFAMRRRIIRSQRDSDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKVVAVKKLSEAKTQGHREFIAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEILNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6983400 6987454 + MELO3C006890.2.1 Cme06g00980 330129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00980 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 806 893 - -
Cme06g00980 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 135 343 - -
Cme06g00980 1300 SUPERFAMILY L domain-like 624 914 - -
Cme06g00980 1300 Gene3D Ribonuclease Inhibitor 504 624 IPR032675 -
Cme06g00980 1300 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Cme06g00980 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 858 926 - -
Cme06g00980 1300 Gene3D Transferase(Phosphotransferase) domain 1 1098 1300 - -
Cme06g00980 1300 SUPERFAMILY Protein kinase-like (PK-like) 1003 1294 IPR011009 -
Cme06g00980 1300 Pfam Leucine Rich Repeat 756 776 IPR001611 GO:0005515
Cme06g00980 1300 Pfam Leucine Rich Repeat 853 875 IPR001611 GO:0005515
Cme06g00980 1300 Pfam Leucine Rich Repeat 805 827 IPR001611 GO:0005515
Cme06g00980 1300 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Cme06g00980 1300 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Cme06g00980 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 348 447 - -
Cme06g00980 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 452 787 - -
Cme06g00980 1300 Gene3D Phosphorylase Kinase; domain 1 985 1097 - -
Cme06g00980 1300 Pfam Protein tyrosine and serine/threonine kinase 1026 1294 IPR001245 GO:0004672|GO:0006468
Cme06g00980 1300 PRINTS Leucine-rich repeat signature 97 110 - -
Cme06g00980 1300 PRINTS Leucine-rich repeat signature 681 694 - -
Cme06g00980 1300 SUPERFAMILY L domain-like 367 632 - -
Cme06g00980 1300 ProSiteProfiles Protein kinase domain profile. 1022 1300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00980 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 452 787 - -
Cme06g00980 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 858 926 - -
Cme06g00980 1300 Gene3D Ribonuclease Inhibitor 625 924 IPR032675 -
Cme06g00980 1300 Gene3D Ribonuclease Inhibitor 213 363 IPR032675 -
Cme06g00980 1300 Pfam Leucine rich repeat 432 490 IPR001611 GO:0005515
Cme06g00980 1300 Pfam Leucine rich repeat 552 610 IPR001611 GO:0005515
Cme06g00980 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 961 1300 - -
Cme06g00980 1300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672|GO:0006468
Cme06g00980 1300 SMART serkin_6 1022 1294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00980 1300 SUPERFAMILY L domain-like 57 363 - -
Cme06g00980 1300 SMART LRR_typ_2 729 752 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 94 118 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 827 850 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 526 548 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 851 875 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 190 214 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 335 359 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 753 777 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 597 623 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 166 189 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 549 573 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 215 239 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 681 705 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 707 728 IPR003591 -
Cme06g00980 1300 SMART LRR_typ_2 287 311 IPR003591 -
Cme06g00980 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 348 447 - -
Cme06g00980 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 136 - -
Cme06g00980 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 961 1300 - -
Cme06g00980 1300 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524
Cme06g00980 1300 Gene3D Ribonuclease Inhibitor 141 212 IPR032675 -
Cme06g00980 1300 Gene3D Ribonuclease Inhibitor 430 503 IPR032675 -
Cme06g00980 1300 Gene3D Ribonuclease Inhibitor 34 140 IPR032675 -
Cme06g00980 1300 Gene3D Ribonuclease Inhibitor 364 429 IPR032675 -
Cme06g00980 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 806 893 - -
Cme06g00980 1300 SMART LRR_sd22_2 94 120 - -
Cme06g00980 1300 SMART LRR_sd22_2 287 313 - -
Cme06g00980 1300 SMART LRR_sd22_2 753 782 - -
Cme06g00980 1300 SMART LRR_sd22_2 406 432 - -
Cme06g00980 1300 SMART LRR_sd22_2 454 480 - -
Cme06g00980 1300 SMART LRR_sd22_2 681 713 - -
Cme06g00980 1300 SMART LRR_sd22_2 573 599 - -
Cme06g00980 1300 SMART LRR_sd22_2 851 877 - -
Cme06g00980 1300 SMART LRR_sd22_2 215 241 - -
Cme06g00980 1300 SMART LRR_sd22_2 166 192 - -
Cme06g00980 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 70 136 - -
Cme06g00980 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 135 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00980 Cme-Chr6:6983400 Cme09g01287 Cme-Chr9:17788528 3.07E-25 dispersed
Cme09g00308 Cme-Chr9:2524432 Cme06g00980 Cme-Chr6:6983400 3.51E-06 dispersed
Cme10g01369 Cme-Chr10:15897984 Cme06g00980 Cme-Chr6:6983400 1.23E-25 dispersed
Cme11g02213 Cme-Chr11:29369857 Cme06g00980 Cme-Chr6:6983400 9.69E-20 dispersed
Cme12g01282 Cme-Chr12:20890285 Cme06g00980 Cme-Chr6:6983400 1.25E-06 dispersed
Cme12g01599 Cme-Chr12:23271355 Cme06g00980 Cme-Chr6:6983400 5.86E-06 dispersed
Cme12g01681 Cme-Chr12:23754913 Cme06g00980 Cme-Chr6:6983400 1.77E-124 dispersed
Cme06g00980 Cme-Chr6:6983400 Cme05g00654 Cme-Chr5:7055603 8.27E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64949 PF07714 PK_Tyr_Ser-Thr 9.40E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00980 - - csv:101215443 2382.83