Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00981 ATGCTTGTGGCTCCTCTCATGGAGGAGCCGACCACCAAGTCGACAACTACTGGAAACGATTCCTACAGATCTGTTCCCACTCCTTTCTTGACCAAGACGTATCAGCTTGTCGACGACGAGTCAATCGACCATGTCATTTCATGGAACGACGACGGATCTACCTTCATCGTTTGGAACACCATGGCTTTCGCTAAAGATTTTCTTCCAAAGTATTTCAAACATAATAACTTCACCAGCTTTCTCCGTCAGCTCAATACTTATGGATTTAGAAAGGTTGTATCGGATCGTTGGGAGTTCGCGAACGAGTGCTTTCGCAAAGGCAAGAAACAGCTTCTTTGTGAGATTCAGCGTCGGAAATTGGCCGGTCCGGTTCCGTCCTCTGCTTCTAACGCGGCTGTTGTGACAACCGTTGGTGCTTCAGCAATTCCGTCTGTCCAACTATTGCCATTGACGGGAAATTCTTCAGGTGAAGAACAAGTGATTTCGTCTGATGAGACTCCAACGAGAGCTCTCGCAGAGCTGATTGATGAGAACGATCGGCTGAGAAGAGAGAAAGTTCAGCTCACGGAACAATTGGTTGAGGTGAAATCTTTGTGCAATAACATCTTCTCGTTGATGTCGAGCTTCGTTGAAAGTCAATTCAAGAGCAGTTTCAAAGTGAGGGAGAGCGTTTTGGCATCGGCAAAATCGCTCGATCTTTTCCCGGTGAAGCGGCCAGCCGGTGAAGAGGAAAGGGCGGAGGTGAAGGAGGAGGAGACGAATCAGATCGGCGTGAAGCGAGCGAGGGAATATAGGGAGGGGGCGACGGAGACGGCGGAGAATGATACTACTCTGCGGCTTCAACCACCGGATAGATGGGTAGTCAAATCAGAGAGGATAAATTGTCAAAAATAA 894 48.32 MLVAPLMEEPTTKSTTTGNDSYRSVPTPFLTKTYQLVDDESIDHVISWNDDGSTFIVWNTMAFAKDFLPKYFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLAGPVPSSASNAAVVTTVGASAIPSVQLLPLTGNSSGEEQVISSDETPTRALAELIDENDRLRREKVQLTEQLVEVKSLCNNIFSLMSSFVESQFKSSFKVRESVLASAKSLDLFPVKRPAGEEERAEVKEEETNQIGVKRAREYREGATETAENDTTLRLQPPDRWVVKSERINCQK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6987551 6989801 - MELO3C006891.2.1 Cme06g00981 330130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00981 297 Coils Coil 171 198 - -
Cme06g00981 297 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g00981 297 MobiDBLite consensus disorder prediction 1 20 - -
Cme06g00981 297 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 10 262 - -
Cme06g00981 297 Gene3D - 21 119 IPR036388 -
Cme06g00981 297 SUPERFAMILY Winged helix DNA-binding domain 26 118 IPR036390 -
Cme06g00981 297 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g00981 297 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g00981 297 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g00981 297 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g00981 297 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g00981 297 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 262 IPR027725 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00981 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101217977 524.242
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g00981 Cme09g01727 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00981 Cme-Chr6:6987551 Cme07g00343 Cme-Chr7:2203667 2.35E-58 dispersed
Cme08g00303 Cme-Chr8:1939394 Cme06g00981 Cme-Chr6:6987551 6.09E-36 transposed
Cme06g00981 Cme-Chr6:6987551 Cme09g01727 Cme-Chr9:21878183 3.13E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41488 PF00447 HSF_DNA-bind 4.50E-32 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00981 Cme_Chr06 FPKM 19.376875 24.874636 28.19713 26.133171 41.697521 47.153648 44.10265 26.238867 30.7847 30.127192
Cme06g00981 Cme_Chr00 FPKM 26.370575 30.937134 24.959579 21.258324 34.600346 38.541885 38.51059 22.023912 26.765596 25.286942
Cme06g00981 Cme_Chr00 FPKM 20.730736 19.844225 13.675362 12.538779 22.387714 20.439913 22.36582 12.895578 14.324824 16.208385