Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00987 ATGGGAGTGAAGAACTTGTGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCACCGTCTTCAGAATAAGAGGTTATGCATCGATCTCTCATGTTGGATAGTTCAGCTTTCCAGTGTAAGCAAATCCCATTGTCATTCGAACAGTAAGTTTTACCTACAAGGGCTCTTTTACCGCCTTCGAACTCTCATTGCCTTGAATTGCAGCCTTATTTTCGTTACAGATGGTTCAATTCCTGGGATTAAAGTGTCAACTTATAGACGCCGCTTGAACAATGGAAATGAGAAACAGGTTGCTCAAACTGATGCAAATCCCCAGCAGATTTGCTCACTGAAAAGAAACATGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCACAAGCCTTAGGACTGGCGCTTGGTATCCCTTGTCTAGATGCGGTAGAGGAAGCTGAAGCACAATGTGCATTGCTGAATTCAGAATTATTATGCGATGGATGTTTTACTTCAGATTCAGATGCTTTCCTTTTTGGTGCTAGGACAGTATATAGGGATATCTGCCTTGGAGATTCTGGACATGTGGTTTGTTACGAATTGGATGACATCAAAACACGGTTAGGATTCGGAAGGAACTCAATGATTACATTTGCTCTACTTCTCGGTAGTGATTACTCGCAAGGCGTTTATGGCATGGGACGTGAATCAGCTTGTCAGCTCGTTAAAGCAGTAGGTGATGTTGCTGTCCTTCAAAAAATTACATCTGAGGGACTGGCTCTCGCGAAGAAGGGGAAAAATTCCAAGAAGCAAGAACTTCCTAAATCTGGGAATGGGCAGTATATTCTTAAATGTGATGAGTTTTCAGAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCTGTGAGTAGGGTTCTTGTTCAGCACCCTTTTCAACGCGTCAAACTTCAGCAGATATGTGCCGAATTTTTTGGATGGCCTCCGGATAAAACAGATGAGAAAATTCTCCCATGGATAGCAGAAAGAGATCTACGGCGATTTGCGAACATTCGGTCTAGAACATCAGAACTTGGTTTCAATATTCCACTTCAAGAGATACCAGTTAGTTGTCCTGTTTCTGGTATTGTCAAGCATCGAAAAGTCCAAGGCAATGAATGTTATGAGGTTTCTTGGAAAAATATTGATGGGCTTATATCTGTTGTCTCAGCAGATCTCTTGCAAAGTGCCTGTCCCGAGATGATTGTAGAATTTGAAGAGAAAAGAGCTGAAGGAAAAAAGCAAAACAAGGGCAAAACTAAAACAAAGAAGTCAGCAGCTGCTATGGCTGAAATTGATAAAAGACTTCAAACTTTGTTGCTCGAAATTGAATCTGAAAGCAGGGCAGTTCATAATATCTCCCATCTTCCCATAGATTCAAAGACTTCTGGTACTGGTGTTCATGAACTGAACCAAGAGGTTTTTCTCAACATTGAACCAATCATTGTTGACCATGCTCGTAGCTGTAGCACAAAGAGGATTGAGGTCATCGATCTCTTAAGCCCTTCACCTGCAATTCACACCCATAGAGTTTCGAAATTTCAACAGAAAACTAGCCAAAAGATTGATGTAATTGATTTGAGTGATACAGAAATTGATCAGTCACCAGAACATGAGAGAAAGGCAAGGGAGTTAAGATCTTTCATAGCTTCATTAAAGGGTAAATGA 1698 40.93 MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLSSVSKSHCHSNSKFYLQGLFYRLRTLIALNCSLIFVTDGSIPGIKVSTYRRRLNNGNEKQVAQTDANPQQICSLKRNMGSEFSLMIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICLGDSGHVVCYELDDIKTRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQLVKAVGDVAVLQKITSEGLALAKKGKNSKKQELPKSGNGQYILKCDEFSEVIDAYLKPKCHSADSEAVSRVLVQHPFQRVKLQQICAEFFGWPPDKTDEKILPWIAERDLRRFANIRSRTSELGFNIPLQEIPVSCPVSGIVKHRKVQGNECYEVSWKNIDGLISVVSADLLQSACPEMIVEFEEKRAEGKKQNKGKTKTKKSAAAMAEIDKRLQTLLLEIESESRAVHNISHLPIDSKTSGTGVHELNQEVFLNIEPIIVDHARSCSTKRIEVIDLLSPSPAIHTHRVSKFQQKTSQKIDVIDLSDTEIDQSPEHERKARELRSFIASLKGK 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7038549 7043163 + MELO3C006899.2.1 Cme06g00987 330136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00987 565 Pfam XPG I-region 135 217 IPR006086 GO:0004518
Cme06g00987 565 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 471 IPR006084 -
Cme06g00987 565 CDD PIN_GEN1 2 200 - -
Cme06g00987 565 Gene3D - 368 436 - -
Cme06g00987 565 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Cme06g00987 565 Gene3D - 203 266 - -
Cme06g00987 565 SMART xpgineu 132 202 IPR006086 GO:0004518
Cme06g00987 565 Gene3D - 2 201 - -
Cme06g00987 565 SUPERFAMILY Chromo domain-like 370 419 IPR016197 -
Cme06g00987 565 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 471 - -
Cme06g00987 565 CDD H3TH_XPG-like 205 241 - -
Cme06g00987 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Cme06g00987 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Cme06g00987 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 131 148 IPR006084 -
Cme06g00987 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 152 172 IPR006084 -
Cme06g00987 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 222 IPR006084 -
Cme06g00987 565 SMART xpgn3 1 97 IPR006085 GO:0004518
Cme06g00987 565 SUPERFAMILY PIN domain-like 3 217 IPR029060 -
Cme06g00987 565 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 202 349 IPR036279 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00987 K15338 GEN1, GEN; flap endonuclease GEN [EC:3.1.-.-] - csv:101214962 1025.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01910 Cme-Chr4:26790392 Cme06g00987 Cme-Chr6:7038549 1.80E-08 dispersed
Cme06g00987 Cme-Chr6:7038549 Cme11g02544 Cme-Chr11:31847223 6.27E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00987 Cme_Chr06 FPKM 8.786012 8.303002 5.312549 5.087873 9.176923 10.476159 8.815115 1.72599 1.909486 2.28588
Cme06g00987 Cme_Chr00 FPKM 13.835588 17.959314 10.568629 10.160324 10.800264 10.615897 10.590603 3.670539 3.658722 3.990822