Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00988 ATGGAAGATCTCATCTTCTATAAGATATTTTCAAAAGGATCAACAACTTTAACATTTATTTCTATTCTTTTTTCTGTCAGAGATCAAAAAGTTGGGATTTTTCACTCTACTGGATATTTAAATCCGTCACAAAATGAAAAAGCGCGCCAAGGCAATGGCCAAAGTGTATGTGTGAATGGCAATGCGTTCGTGAGTGAAAGAAGAAGCAACTACGGATTTTGTTCTGAAAATTTCATGGGGAAACAGAAGCAACAAGTGATCTCTCGATTCTTTGCTCCAAAACCCAAGTTCCCATCTCTTTCTTCTTCTTCTTCCTCCTCCGCCACCGCCGCCGACATAACTCTGCCGACCCAACCGTTTTCACCTGCTAAGGTATCGGCCACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCCATCGCCTCTCAGTTAACACCGCCCAAATCCTCTAAACGACCAAAACTCTCGCCTCATACCCACAACCCTCTGCCTTCCATCCCCAATCCCTCACTTCACCAAAGATTTCTCGACAAGTTCCTTGAACCCACCGATGATTCTTTCCAACCTTCTAATCAAAACCCCAGAACCTCAAATGGTGGTGATCCCAAATACAAATACACCCCTTTGGAACAACAGGTTGTGGACCTTAAGAAGAGGTTCCCTGATGTTCTTCTCATGGTGGAGGTTGGTTATAGGTACAGATTTTTTGGCCAAGATGCTGAAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCAAGTATACCCACGTTTAGATTGAATGTGCATGTGAGAAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTCAAGCAAACTGAAACTGCTGCGATAAAGGCTCATGGGTCGAATAAGTTAGGCCCGTTTTGTAGGGGATTGTCGGCTTTGTATACTAAAGCAACATTGGAGGCAGCACAGGATTTAGGGGGAGCTGAAGAGGGATGTGCTGGAGAGAGTAATTACTTGTTCTGTTTGGTTGAAAATAGTATGTTGGTGGATAATTTGGACTGTAGAATCGAAAATGGGGTTGATGTGAAAATTGGGATCGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGACGATAACTTTATGAGAAGTGGACTTGAGGCAATGCTCTTGAGCCTGGCTCCTGCTGAGTTGCTTCTTGGAGATCCCATATCAAAGCCAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCGTGTATCGCGAGATTGCTTTAAAAATGGCAGTGCACTTGCTGAAGTGATGTCTTTGTATGAAAACATTGACCAAGATAACTTAACTGAAGATAACAACCCTGAAACAGTGTTGATTGGACAAAAAAGTGACCTCACAGCAATTAAGGAAATAGTGAACATGCCTAATTTAGCTCTTCAAGCATTTGCCTTAACCATTCGTCACTTAAAGCAATTTGGTTTAGAAAGGGTTGTGTCTTTGGCATCTTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACGCTTACACAACTCGAGGTTTTGAAGAATAATGATGACGGTTCTGAAACTGGATCTTTATTACATTGCATGAATCATACTCTTACAATATTTGGTTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAAACATGATAATTGCTCGTCAAGAGGCTGTTTCTGAGATTGCTGCATCTATGGTATCTTCAAAAGTATCTTCAAATAACGGAGTGTTGGATGAAGAAGATTCTGATGTCATTGTCATTGAACCAGAATTGAATTACATACTTTCTTCGGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACAGCAGCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTTTATTTGCGGGAAAACAGCTTCAGCAGTTTCATATTGATGAAGAAGATGACAATTGTTCCAGTGAAAGTATTATTGGCTCCAAGCTCCTAAGAAAGCTGATTTTATCTGCTTCTTCCTCTGGTTTAATAAACATTGCGGCAAAGCTTTTGTCAACGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCAAACCTAATGATCATCTACAGTGACCAATATCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCCAGAGAGAAATTGGATGCTCTGATCACCTTCTACCGCAAGCAGCTTGGAATGCGGAAGTTGGAGTTCACCAGTGTGTCTGGAACTACGCATTTGATTGAGTTAGCCATAGATGTAAAGGTGCCTTCAAAGTGGGTTAAGATCAATAGTACCAAGAAAACTGTAAGGTATCACCCACCTGAAGTATTGGCTGCGTTAGATGAGCTATCGCTGGCAAATGAAGAGCTCATGGTTGCGTCTCGTGATGCTTGGGATGACTTTCTGAGAGGATTCAGCAGATATTATGCAGAGTTTCAAGCTGCTGTTCAAGCATTGGCTTCCATAGACTGCCTGTATTCGTTAGCAATTCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTACATGATGATGAACCTGCTCAGATACATATATGTTCTGGACGCCATCCGGTTTTGGAAGGTACATTACAAGGCAATTTTGTCCCAAACGACACAAATTTGGATGCAAATGGAGAGCATTGTCAAATTGTAACAGGACCGAACATGGGTGGAAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGTCTCAGGTTGGTTCCTTTGTACCGGCATTCTCTGCGAAACTTCATGTCTTAGACGGTATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACCTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCGTCATTCCTCATCGCGTTCCTTGGTCATAATTGATGAACTTGGGCGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATATGCAGCTCTGCATAATCTACTCCAGCAGAAGAAATGTTTGGTTCTCTTTGTCACCCACTATCCCAAAGTTGCTGAGATTGCGAAGGAATTCCCAGCATGTGCGAGGGCATACCATGTTTCATATCTTACATCACACAAAAATCCAAGCTTGTCAGGCCAAAAATCAACTGAGGACGTGACTTACTTATACAAGCTTGTTCCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAAGTTGCACAACTTGCACAGATACCTTTATCGTGTATTGCACGGGCCACAGAAATGGGGATCTGGTTGGAAGAAATAGTAGCAAGAAGAGCACAGCACAAATCCAGAGAACACTTGCCAGAAATATCGGTTAAGGGGTTGGAATGGCAAAGCTTCCAGTCCTTCCTCGAGAGAATTGATGGTTATGAGGAATTCTTTCTTTTCTTGAAAGCTACAGTACGTTCTGCTGATGTCATGGGGACATGGTGCCATCAAATTTACCAAGCTAGACGCATGGCCATGGACTTGTTAGGAAGGTGA 3564 42.62 MEDLIFYKIFSKGSTTLTFISILFSVRDQKVGIFHSTGYLNPSQNEKARQGNGQSVCVNGNAFVSERRSNYGFCSENFMGKQKQQVISRFFAPKPKFPSLSSSSSSSATAADITLPTQPFSPAKVSATVTFSPSKRLISSAIASQLTPPKSSKRPKLSPHTHNPLPSIPNPSLHQRFLDKFLEPTDDSFQPSNQNPRTSNGGDPKYKYTPLEQQVVDLKKRFPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAQDLGGAEEGCAGESNYLFCLVENSMLVDNLDCRIENGVDVKIGIVAMEISTGDVIYREYDDNFMRSGLEAMLLSLAPAELLLGDPISKPTEKLLLGYAGPASNVRVERVSRDCFKNGSALAEVMSLYENIDQDNLTEDNNPETVLIGQKSDLTAIKEIVNMPNLALQAFALTIRHLKQFGLERVVSLASSFRPFSCKMEMTLSGNTLTQLEVLKNNDDGSETGSLLHCMNHTLTIFGSRLLRQWITHPLCDRNMIIARQEAVSEIAASMVSSKVSSNNGVLDEEDSDVIVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFHIDEEDDNCSSESIIGSKLLRKLILSASSSGLINIAAKLLSTISKEAADQGDFPNLMIIYSDQYPKVARARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSKWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVHDDEPAQIHICSGRHPVLEGTLQGNFVPNDTNLDANGEHCQIVTGPNMGGKSCYIRQVALIALMSQVGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILRHSSSRSLVIIDELGRGTSTHDGVAIAYAALHNLLQQKKCLVLFVTHYPKVAEIAKEFPACARAYHVSYLTSHKNPSLSGQKSTEDVTYLYKLVPGVAESSFGFKVAQLAQIPLSCIARATEMGIWLEEIVARRAQHKSREHLPEISVKGLEWQSFQSFLERIDGYEEFFLFLKATVRSADVMGTWCHQIYQARRMAMDLLGR 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7043015 7051085 - MELO3C006901.2.1 Cme06g00988 330137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00988 1187 MobiDBLite consensus disorder prediction 184 207 - -
Cme06g00988 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 866 1107 IPR027417 -
Cme06g00988 1187 SUPERFAMILY DNA repair protein MutS, domain II 334 462 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 179 1170 - -
Cme06g00988 1187 Pfam MutS domain III 526 858 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 Pfam MutS domain II 356 506 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 179 1170 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cme06g00988 1187 Gene3D - 866 1140 IPR027417 -
Cme06g00988 1187 MobiDBLite consensus disorder prediction 186 202 - -
Cme06g00988 1187 Gene3D MutS, connector domain 332 520 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 Pfam MutS domain V 913 1107 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 ProSitePatterns DNA mismatch repair proteins mutS family signature. 991 1007 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 Gene3D - 708 834 - -
Cme06g00988 1187 SUPERFAMILY DNA repair protein MutS, domain III 526 864 IPR036187 -
Cme06g00988 1187 Pfam MutS domain I 209 319 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 SMART DNAend 541 893 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 SUPERFAMILY DNA repair protein MutS, domain I 204 317 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 SMART mutATP5 910 1109 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 MobiDBLite consensus disorder prediction 142 171 - -
Cme06g00988 1187 Gene3D DNA repair protein MutS, domain I 199 327 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cme06g00988 1187 Gene3D - 523 858 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00988 K08736 MSH3; DNA mismatch repair protein MSH3 - csv:101214720 2007.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01715 Cme-Chr1:23943681 Cme06g00988 Cme-Chr6:7043015 3.97E-50 dispersed
Cme01g02200 Cme-Chr1:30799175 Cme06g00988 Cme-Chr6:7043015 7.81E-48 dispersed
Cme02g01765 Cme-Chr2:24560785 Cme06g00988 Cme-Chr6:7043015 3.61E-56 dispersed
Cme05g01970 Cme-Chr5:28270359 Cme06g00988 Cme-Chr6:7043015 1.27E-20 dispersed
Cme06g00444 Cme-Chr6:2822398 Cme06g00988 Cme-Chr6:7043015 4.80E-19 dispersed
Cme06g00988 Cme-Chr6:7043015 Cme09g01603 Cme-Chr9:20837457 5.03E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00988 Cme_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cme06g00988 Cme_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0