Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01000 ACGGCAGCGTACAATTTAACAATAAAAGGGAGCGGGAAATCCCAATATTACCCTAACGACACTTCCGAAGTCCCAGAAAACCCAAACCACCGACGACGACGACGTCAAGTCGAATTCGCACTCGATTGTACTTCCTTCAATAACATCACAGGAGGAGCCTGCCCTGCCAACTACCCCACCAATAGGACTACTGACGAACATGAGAACCGTCCATCTTCAACCACGTGCCCCGAGTACTTCCGTTGGATTCACGAGGACCTTAGACCGTGGGCCCGGACGGGGATATCGAGGGCCGCGGTGGAGGCTGGGCAACGGACGGCGAATTTCCGGCTAGTGATTCTGAATGGGAAGGCTTACGTGGAGACTTATAAGAAGTCGTTTCAAACGAGAGATACTTTTACGGTGTGGGGGATTCTACAGCTGTTACGGAGGTACCCCGGAAAAGTGGCTGATTTGGATCTTATGTTTGATTGCGTTGATTGGCCTGTGATTTTGAGCAGCCATTTTAGTGGGCCTGATGGGCCTACCCCACCTCCTTTGTTTCTGGCCGACTTTTGTAGGCCAGAGATCAATATAAAGCCATGGGAGCCGTTGTTGAAGGATCTAAAAGAAGGGAATAAAAGGATTTTATGGAAGAGTAGAGAGCCTTATGCATACTGGAAAGGAAATCCGGAGGTCGCCGACACCCGAAAAGATCTACTCAAATGCAATGTCTCTGACCAACAAGACTGGAATGCTCGTGTATTTGCTCAGGATTGGACGAAAGAATCCCAGGAGGGATACAAGCAATCAGATCTTTCAAACCAATGCCTTCATAGATATAAAATCTATATAGAAGGATCAGCTTGGTCTGTTAGTGAAAAGTACATTCTTGCTTGTGATTCCGTTACCTTAATTGTAAAGCCCCATTACTACGACTTCTTCACGAGAGGTTTGATGCCAGTGCACCACTATTGGCCTGTAAAGGATGACGACAAGTGCAAGTCTATAAAATTTGCAGTTGATTGGGGCAACAGCCATAAGCAAAAGGCACAAGCCATTGGTAAAGCAGCTAGCAGTTTCATCCAAGAGGAGCTGAAGATGGACTATGTCTATGACTACATGTTCCATCTTCTAAGTGAATATTCCAAACTCCTTACTTTCAAGCCAACGGTACCGCCCACTGCAATCGAGCTTTGTTCTGAAGCCATGGCTTGTCCAGCTGAAGGGCTCACCAAGAAATTCATGACAGAGTCATTAGTGAAGAGGCCTGCAGAGTCGAACCCATGCACAATGCCTCCTCCATATGATCCCGCATCGCTTCATTTTGTTCTTAGAAGAAAAGAGAATTCAATCAAACAAGTGGAAAAATGGGAGACAAGTTTCTGGAATACTCGAAGTAAGCAGCCATAG 1392 46.48 TAAYNLTIKGSGKSQYYPNDTSEVPENPNHRRRRRQVEFALDCTSFNNITGGACPANYPTNRTTDEHENRPSSTTCPEYFRWIHEDLRPWARTGISRAAVEAGQRTANFRLVILNGKAYVETYKKSFQTRDTFTVWGILQLLRRYPGKVADLDLMFDCVDWPVILSSHFSGPDGPTPPPLFLADFCRPEINIKPWEPLLKDLKEGNKRILWKSREPYAYWKGNPEVADTRKDLLKCNVSDQQDWNARVFAQDWTKESQEGYKQSDLSNQCLHRYKIYIEGSAWSVSEKYILACDSVTLIVKPHYYDFFTRGLMPVHHYWPVKDDDKCKSIKFAVDWGNSHKQKAQAIGKAASSFIQEELKMDYVYDYMFHLLSEYSKLLTFKPTVPPTAIELCSEAMACPAEGLTKKFMTESLVKRPAESNPCTMPPPYDPASLHFVLRRKENSIKQVEKWETSFWNTRSKQP 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7159458 7162505 + MELO3C006909.2.1 Cme06g01000 330149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01000 463 MobiDBLite consensus disorder prediction 1 24 - -
Cme06g01000 463 Pfam Glycosyl transferase family 90 73 452 IPR006598 -
Cme06g01000 463 SMART cap10 148 382 IPR006598 -
Cme06g01000 463 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 32 460 - -
Cme06g01000 463 MobiDBLite consensus disorder prediction 1 32 - -
Cme06g01000 463 PANTHER MOTIF-CONTAINING PROTEIN 1, PUTATIVE-RELATED 32 460 - -
Cme06g01000 463 MobiDBLite consensus disorder prediction 54 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01000 - - - csv:101212790 889.797
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00990 Cme-Chr6:7060618 Cme06g01000 Cme-Chr6:7159458 5.39E-71 dispersed
Cme06g01000 Cme-Chr6:7159458 Cme11g02149 Cme-Chr11:28934369 5.45E-166 dispersed
Cme06g00992 Cme-Chr6:7067274 Cme06g01000 Cme-Chr6:7159458 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g669 . . Bda05g00074 . . . . Bma14g02085 . . . . . . . . Cpe14g00108 . . . . . . . Cla01g00104 Cam01g0103 . Cco01g0105 Clacu01g0101 . Cre09g2404 . . . . . Csa05g00297 Chy09g01209 Cme06g01000 . Blo09g00110 . . . . . . . . . Cma16g00128 . . . Cpe09g00091 . . . . . . . . Cla05g00882 Cam05g0969 Cec05g0973 Cco05g0973 Clacu05g0956 Cmu05g0913 Cre05g0997 . Csa03g01711 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01000 Cme_Chr06 FPKM 1.536859 0.0 0.0 0.0 0.0 0.0 0.0 2.661308 1.419764 1.834448