Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01001 ATGGTGAGCCAAAGGCAACGGCTTGCTCGGAAAAAGTACAGAGAAGGACACCCAGAACTGTTCCCGAAAGCAGAGCCAACGCCACCAAAAGACCCGGACAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGGAGAATCGAACTCAAACAGAGACCCAAATAAACCCCACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTACCTGGGATGAAGCCTGGAGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGTCTCAAGAATTGTCCAGACAAAAATGAAGGGACCATGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTAGCTAATTGTCCACAACCCCTTCAAGATGGGGGAACTAAATTCGCCAGTTGTTTTATTTGTAATGAAAGTGGACACTTAAGCAAGAACTGTCCGAAGAATACTCATGGGATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGAGAAGTCACACATTTAGCTAAGGATTGTCCAAAGAAAGGAACCCAAGTGTTTGATCGGGCAGCATCTGGATACGTGGAAATGCCAAGACGACCAGAGACGAAGCTAGTCAGTGGTGATGATCTCGAGGATGACTTCATGATTGATGAAGATCAAAAAAAAAAATAA 723 43.85 MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKKSKFKRKKGESNSNRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNEGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAASGYVEMPRRPETKLVSGDDLEDDFMIDEDQKKK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7161971 7172247 - MELO3C006911.2.1 Cme06g01001 330150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01001 240 MobiDBLite consensus disorder prediction 8 34 - -
Cme06g01001 240 Gene3D - 71 123 - -
Cme06g01001 240 PANTHER OS04G0555800 PROTEIN 1 239 - -
Cme06g01001 240 ProSiteProfiles Zinc finger CCHC-type profile. 182 197 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 MobiDBLite consensus disorder prediction 1 69 - -
Cme06g01001 240 Gene3D - 124 150 - -
Cme06g01001 240 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 SMART c2hcfinal6 101 117 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 SMART c2hcfinal6 76 92 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 ProSiteProfiles Zinc finger CCHC-type profile. 155 170 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 SUPERFAMILY Retrovirus zinc finger-like domains 70 119 IPR036875 GO:0003676|GO:0008270
Cme06g01001 240 Pfam Zinc knuckle 155 170 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 Pfam Zinc knuckle 127 143 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 Gene3D - 151 207 - -
Cme06g01001 240 SUPERFAMILY Retrovirus zinc finger-like domains 121 171 IPR036875 GO:0003676|GO:0008270
Cme06g01001 240 MobiDBLite consensus disorder prediction 218 240 - -
Cme06g01001 240 Pfam Zinc knuckle 100 116 IPR025836 -
Cme06g01001 240 Pfam Zinc knuckle 181 197 IPR025836 -
Cme06g01001 240 ProSiteProfiles Zinc finger CCHC-type profile. 128 143 IPR001878 GO:0003676|GO:0008270
Cme06g01001 240 MobiDBLite consensus disorder prediction 215 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01001 - - - cmo:103484078 474.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01001 Cme-Chr6:7161971 Cme06g02380 Cme-Chr6:31011912 3.39E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01001 Cme_Chr06 FPKM 0.993146 1.172998 3.903431 3.430076 21.142962 22.756392 20.787386 10.455485 10.470888 9.7118
Cme06g01001 Cme_Chr00 FPKM 1.395222 1.793531 2.41371 2.293289 15.183074 16.126129 15.497494 6.867781 7.496239 6.80171