Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01002 ATGAATAATTCTAAATTTTGCATTAGCAACCTTGGCTTTCTCCCTCCAAGCAACAATAGAGTGGATGCAGGGGAAACAAGAAAAACAAGAAGCATGAAGAAGATAAAATGCGAAGATCTAGGGATAAACATGTGCGCATTTGCAGTTTCATGGTGGGGAAAAAGGTGTGTGCTTGAAAAGACGGTGAAACATGACGGAGAAGAAGGATTCACATGTCAGATATCAAAGATTATGGAAGTGAAGAAATTAAGGAACAGAGTCGAAACAGATAAGTGTGTCCGACGTTGTGGCCTCGACAGGAACACCCTCGGCATCTCCTCAGATTCCCTCCTAGATACTCGTTTCACTTGCAACCTCTGTTTTTCTCACTGCTATAACCATTGCCCCAATATCGTCCACCTTTTCACCAATCTCGCCGCAGCTGAAGGTTTGTATCTTCCAAAGCTTTGTAATGCTGAAGGAGGAAATGTGAGAAGAGAAATGTCCAATATTAGAAGTTCTGGGATAGTTGCATCGGGACCTATTCAGTCGGCTTCGATTTTGATTGCGCCCGCCGTCACACAAGAGCCACTTCAGTTCAACTCTATGTCGTTTGCTCCGGTCACAAATGGAGTTTGA 618 43.69 MNNSKFCISNLGFLPPSNNRVDAGETRKTRSMKKIKCEDLGINMCAFAVSWWGKRCVLEKTVKHDGEEGFTCQISKIMEVKKLRNRVETDKCVRRCGLDRNTLGISSDSLLDTRFTCNLCFSHCYNHCPNIVHLFTNLAAAEGLYLPKLCNAEGGNVRREMSNIRSSGIVASGPIQSASILIAPAVTQEPLQFNSMSFAPVTNGV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7173617 7174808 - MELO3C006912.2.1 Cme06g01002 330151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01002 205 Pfam PAR1 protein 35 186 IPR009489 -
Cme06g01002 205 PANTHER PAR1 PROTEIN 32 190 - -
Cme06g01002 205 PANTHER PAR1 PROTEIN 32 190 IPR009489 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01002 - - - csv:101212311 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01002 Cme-Chr6:7173617 Cme06g01003 Cme-Chr6:7182450 2.00E-77 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g690 . . . . . . Bma10g01226 . . . . . . . . . . Bhi01g01318 . . . . Mch10g0152 . . . . . . . . Cone1ag1159 Cone5ag0869 . . . . . Cme06g01002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01714 Chy06g00949 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003494 2 2 2 3 2 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 2 1 1 1 1 2 1 3 1 3 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01002 Cme_Chr06 FPKM 5.714667 5.330449 11.542523 11.987755 6.074607 4.656617 7.275543 26.545036 26.067118 23.654079
Cme06g01002 Cme_Chr00 FPKM 4.819149 4.980958 9.799664 10.77553 4.136947 3.130265 5.15206 19.448116 19.142059 18.862387