Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01003 ATGAATTATTCTACGTTTGGCTTCATCATTCTCCTTCTTCTGCCTATCTCTTTCCAAATAACATTAGGGGACTCGAGAACGAGTGACAGCAACATGATAAAGTGCAAGAGTTTAGAGAAAAACAAGTGTGCATTTGCGGTTTCATGGTCCGGAAAAAGGTGTGTCCTTGAAAAGTCAGTGAAACGCAGCGGAGAAGAAGCATTCACATGTCGGACGTCCGAGATCGAGGCCGACCGATTACAAAACATTGTTGAAACAGAGGAATGCGTCAAAGGTTGTGGACTCGACAGGAACACTCTCGGCATCTCATCTGACTCCCTTCTAGACACTAGCTTCACTCGCAAACTTTGTTCCTCTCGTTGTTACAACCATTGTGCCAATGTTGTCGACCTCTTCTTCAACCTGGCCGCTGGAGAAGGTGTTTTTCTTCCAAAGTTGTGTGAAGTTCAAGGAGGAAATGTGAGAAGAGGAATGTCGGAGATTAGAAGCTCAGGGATTGTCGCACCGGGACCAATTCAACCAGTTTCTTTGTCTATTGCGCCGGCAGTTGCACCAGGACCGATTCACGCGATCTCTTTATCAGCTGCTCCAGCAATGGCTCCGACGATGAATCGAGCTTAA 621 46.54 MNYSTFGFIILLLLPISFQITLGDSRTSDSNMIKCKSLEKNKCAFAVSWSGKRCVLEKSVKRSGEEAFTCRTSEIEADRLQNIVETEECVKGCGLDRNTLGISSDSLLDTSFTRKLCSSRCYNHCANVVDLFFNLAAGEGVFLPKLCEVQGGNVRRGMSEIRSSGIVAPGPIQPVSLSIAPAVAPGPIHAISLSAAPAMAPTMNRA 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7182450 7183792 - MELO3C006914.2.1 Cme06g01003 330152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01003 206 Pfam PAR1 protein 33 185 IPR009489 -
Cme06g01003 206 PANTHER PAR1 PROTEIN 9 202 - -
Cme06g01003 206 PANTHER PAR1 PROTEIN 9 202 IPR009489 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01003 - - - csv:101216404 393.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02677 Cme-Chr4:32362477 Cme06g01003 Cme-Chr6:7182450 3.97E-52 dispersed
Cme06g01002 Cme-Chr6:7173617 Cme06g01003 Cme-Chr6:7182450 2.00E-77 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g692 . . . . Bpe03g00284 . Bma10g01227 . . . . . . . Sed07g1041 . . Bhi01g01317 Tan01g0248 Cmetu06g1326 . Hepe07g0155 . . . . . . . . . . . . Cone15ag0081 . . . Cme06g01003 Blo07g00407 . . . . . . Bma12g01120 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01715 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003494 2 2 2 3 2 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 2 1 1 1 1 2 1 3 1 3 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01003 Cme_Chr06 FPKM 3.164318 4.797185 6.031434 6.93207 6.056973 5.892166 7.001455 11.285451 11.273493 10.817739
Cme06g01003 Cme_Chr00 FPKM 3.537334 4.354609 6.144238 7.258915 6.058071 5.515976 6.66188 10.608282 11.438865 10.705524