Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01010 ATGGGAACCTCTGTTCAGGTGACACCACTTTGTGGGGTGTACAATGAAAATCCTCTATCCTATTTGGTCTCCGTTGACGACTTCAACTTCCTTATCGACTGTGGTTGGAACGACCACTTCGATCCTGCTCTTCTTCAACCTTTATCCAGGGTGGCATCCACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTAGGGGCCCTTCCTTATGCCATGAAACAACTTGGACTTTCTGCTCCAGTTTTTTCCACTGAACCCGTGTACCGATTGGGTCTCCTTACAATGTATGATCAGTTCATCGCAAGGAAGCAAGTGTCGGAGTTTGATCTTTTTACACTGGATGATATCGATTCTGCTTTCCAAGTTATAACCAGACTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCACCTCATGTGGCTGGGCATCTATTGGGGGGAACGCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCCGTTGACTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTCGTGCGACCTGCTGTATTGATAACTGATGCATATAATGCTCTAAATAATCAGCCTTACAGACGTCAGAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGAGCTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGCGTGCTGGAGCTTATTCAAATTTTGGAATGGTACTGGGAAGAGGAAAGTTTAAATTATCCCATTTTCTTTTTAACTTACGTTGCATCCAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATACAATAGCAAAGTCTTTTGAACACACACGGAACAACGCTTTTCTTCTCAAACATGTTACCCTTCTAATCAACAAAAGTGAACTTGATAATGCTCCAGATGGTCCAAAGGTTGTTCTAGCATCAATGGCTAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTTGACTGGGCAATGGATGCCAAAAACCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGCACTTTGGCCCGCATGCTTCAAGCTGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCGTTGACTGGAGATGAGCTTATTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGGAGGAACAATCTAAAGCATCTCATGGAGCTGATAATGATACTGGCGATCCAATGATCATTGATGCTAGCAGTAATGCAGCACCAGATGTCGGGAGTTCACATGGAGGTGCATACAGAGACATATTAATTGATGGTTTTGTTCCTCCTTCAACCAGCGTTGCTCCAATGTTTCCCTTCTATGAAAACACCTCTGCATGGGATGATTTTGGTGAAGTAATCAATCCTGACGATTATGTAATTAAGGATGAAGACATGGACCAAGCAGCAATGCATGCTGGTGGGGACGTTGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTAGATATGAAGCCTTCGAAAGTTGTATCTAATGAATTGACAGTCCAAGTTAAATGCTCATTGCATTACATGGATTTTGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTTGCTCCATTGAAGCTTGTTTTGGTGCATGGAACCGCAGAGGCAACCGAGCATCTTAAACAACATTGCCTTAAAAATGTCTGCCCCCATGTCTATGCCCCCCAAGTTGAAGAAACGATCGATGTTACTTCTGATTTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGTAATGTGCTGTTTAAGAAGCTTGGGGATTATGAAATCGCTTGGCTCGATGCTGAAGTAGGGAAGACTGAGAATGGAACGTTGTCTTTACTTCCTCTCTCAAAGGCTCCTGCGCCTCATAAATCTGTTCTTGTTGGTGATTTAAAAATGGCCGACTTCAAACAATTTCTTGCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCCTACGCAAGGTTACAGATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGGGCCGTTATGTGAGGATTATTATAAAATTCGGGAACTTTTGTATTCACAATTTTATTTGCTATAA 2217 42.26 MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDSAFQVITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRNNAFLLKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKEEQSKASHGADNDTGDPMIIDASSNAAPDVGSSHGGAYRDILIDGFVPPSTSVAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQAAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQVEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7258371 7267469 + MELO3C006919.2.1 Cme06g01010 330159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01010 738 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 737 IPR027075 GO:0005847|GO:0006378|GO:0006379
Cme06g01010 738 SMART Beta_Casp_2 242 365 IPR022712 -
Cme06g01010 738 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 532 584 IPR011108 -
Cme06g01010 738 Pfam Metallo-beta-lactamase superfamily domain 22 197 IPR001279 -
Cme06g01010 738 Pfam Beta-Casp domain 242 365 IPR022712 -
Cme06g01010 738 Coils Coil 392 412 - -
Cme06g01010 738 Pfam Cleavage and polyadenylation factor 2 C-terminal 642 735 IPR025069 -
Cme06g01010 738 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 601 IPR036866 -
Cme06g01010 738 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Cme06g01010 738 Gene3D - 7 256 IPR036866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01010 K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2 - csv:101215673 1460.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01010 Cme-Chr6:7258371 Cme12g00978 Cme-Chr12:17090652 8.96E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g706 . . . . . . . . . . . . . . Sed07g1024 . . Bhi01g01305 Tan01g0239 Cmetu06g0283 . Hepe07g0147 . . . . . . . . . . . . . . . . Cme06g01010 . . . . . . . . . . . Cma16g00118 . Car16g00108 . . . . . . . . . . . . . . . . . . Csa03g01722 Chy06g00954 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01010 Cme_Chr06 FPKM 8.095039 10.404629 7.269852 7.227505 6.422688 5.673587 6.588247 5.841451 5.322351 6.374378