Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01012 ATGGCTTCCACTTCTCCCACGTGTTCACCCAGCTCTCTTCAGCTTCGTCTCGCTCTCAATTGCAACAATTGCGGAAAATTCCCTTCAGTTTTTGTTCGTGCGAGAGTTAGGAAATTGGATCCTCGACTCCGCATAGTTTGTCAACCTATTGTTCATAATGGCGCCAAATTTGATAGAGGAAATGGACTGCGTGGCACTGGAGTTTGTTTTGCTGGATCGGAGTCTACGGCTGATGGGTTCTCTGGGTGGTCGGAGTCGGATTCCCAAGGGGAGGTTTTGGACTTGCGGAGAAAGAAGTGGTTTGGAGGATTGGTGGGGATTGGAATTACTGGATTCATCCTCGTCTCCGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATAGTTCCAGACAAAAGCTGCAAATGGAGGCCTTAAGTACACAGCAAGAATTATTGTTGGACTCTGAGACTGGAACTGATAGGCTTGGTGAAGATGAAAAGGAAGATAATAGTGTGGATGCAGATGATGAAACTTTCGCTGGTAAAGCAGGTAATCAAGAGGACTCTTCTTCATGTACAGAAAATGAAGAAACTCTCAATAAAAATAGAGTTGGTGACGGTGTTGATGTTGAGGAGTTGGCAGAAAATTATGTTGAATCTTCATCCAGCAACAACGATGTCCATAATTTTGCTTCCTTGCAAGAAGATTTCCAATCTGATTCCTCACTAACTGTTACAGCAGTTGCTCCTGGAAGTTTGAGTTCACCTATCTCACCTGAATCTGAGTTTGATTCTAATGTAGCTTCTTGTTTAAAAGATGTAAACAACTGTCATCCTGGTTTAGAAGTCTCAACATCTGAACCTGAAATGAATGTATTGAAAGATGAACCAGACAACTCGCCTAACTCTAATGCTAATTCATTAAACCTTAAAACTGATATTCGGGATGAAAGACCCGACACTGGTGAAAATTTTGATCTCAGCTCTAAGAAGTTACCAGTTTATGATGAAAGTTCATCAAACTATATTTCTGGCAACCAGGATGAGACACTTGGTTCTGTAAATGAAATTACAGATTCTTCATTGCAAGGATTTTCTAGCGTATCTCGCGACACAGCCAAGGAATCAAGATTATTTGACGGAGGGACTGTGGCTAAATCATTTGAAGGAGTTTTGAGCCCCAGCAAAATTGAACAGTTCTCATCTGAGGATATTGCACCAAGCATAGAACAGCAACTAGAAAGTGGATTATCTGAAGCAGCATTAGTCTCTATCACAGATTATCCACTTGCAGATGATCAAGAGAATAATCATGAAACTATCATGAATGGTGTTCCTGCTCCTTTGGTTTCTGCAGCTGTTAAAACACTTCCTGGTAAGGTCCTAGTTCCTGCAGTAGTGGATCAGGTTCAGGGGCAAGCATTGGCAGCACTGCAAGTCTTAAAGGTGATTGAAAGTGATGTTGAACCTAGTGATCTATGTACTCGTCGGGAATATGCTCGCTGGCTGGTGTCTGCAAGCAGTGCTCTCTCAAGGAACACAACATCTAAAGTATACCCAGCGATGTATGTAGAGAATGTTACCGAGCTTGCTTTTGATGATATTACACCCCAAGACCCTGATTTTGCATCTATTCAAGGTTTAGCTGAAGCTGGACTGATATCAAGCAAGCTTTCTAGACATGATATTTCTTCTTCATTGGACGAAGACCAGGGTCCTTTATATTTCTCTCCTGAAAGCCTCCTGTCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTTGAAAAGAGACAGCTGCCAGAGGCAGATAGAAAGATGCTTCACCAAGTTTCTGGATTTATTGATACTGATAAGATCCATCCAGATGCTTGTCCTGCAATTGTTGCTGATCTTTCTGTCGGAGAACAGGGAATAATAGCTCTTGCATTTGGATATACAAGGCTTTTCCAGCCAGATAAGCCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATAGTAAGTGAGGAGCTTGCAAGGATTGAAGCTGAATCAATGGCAGAAAATGCTGTTGCTGCGCATAGTGCTTTGGTAGCTCAAGTTGAGAAAGATATTAATGCTAGCTTTGAGAAAGAACTTTCCATTGAAAGAGAGAAGGTTGAGGCTGTGGAGAGAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATCAGAACGTGCGAGAGATAGTCTCGCGTTGATGATGGAACGTGCTTCTGTTGAATCTGAAATGGAAGTTCTTTCAAGGTTAAGGAGTGAGTTGGAGGAGCAGTTGCAAGGCCTGATGAGCAACAAAGTAGAGGTATCTTATGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAAGAGATTTCCCGCCTGCAGTATGAGCTTGAGGTTGAGAGAAAGGCGCTGTCCATGGCCAGGAATTGTGGTTACAAAGGGAATAGGTGA 2475 42.46 MASTSPTCSPSSLQLRLALNCNNCGKFPSVFVRARVRKLDPRLRIVCQPIVHNGAKFDRGNGLRGTGVCFAGSESTADGFSGWSESDSQGEVLDLRRKKWFGGLVGIGITGFILVSGITFAAWSINKQNSSRQKLQMEALSTQQELLLDSETGTDRLGEDEKEDNSVDADDETFAGKAGNQEDSSSCTENEETLNKNRVGDGVDVEELAENYVESSSSNNDVHNFASLQEDFQSDSSLTVTAVAPGSLSSPISPESEFDSNVASCLKDVNNCHPGLEVSTSEPEMNVLKDEPDNSPNSNANSLNLKTDIRDERPDTGENFDLSSKKLPVYDESSSNYISGNQDETLGSVNEITDSSLQGFSSVSRDTAKESRLFDGGTVAKSFEGVLSPSKIEQFSSEDIAPSIEQQLESGLSEAALVSITDYPLADDQENNHETIMNGVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIESDVEPSDLCTRREYARWLVSASSALSRNTTSKVYPAMYVENVTELAFDDITPQDPDFASIQGLAEAGLISSKLSRHDISSSLDEDQGPLYFSPESLLSRQDLVSWKMALEKRQLPEADRKMLHQVSGFIDTDKIHPDACPAIVADLSVGEQGIIALAFGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKVEAVERMAEEAKQELERLRSERARDSLALMMERASVESEMEVLSRLRSELEEQLQGLMSNKVEVSYEKERINKLRKEAEIENQEISRLQYELEVERKALSMARNCGYKGNR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7277133 7287322 + MELO3C031643.2.1 Cme06g01012 330161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01012 824 MobiDBLite consensus disorder prediction 306 320 - -
Cme06g01012 824 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 816 - -
Cme06g01012 824 Coils Coil 746 773 - -
Cme06g01012 824 MobiDBLite consensus disorder prediction 178 193 - -
Cme06g01012 824 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 816 - -
Cme06g01012 824 MobiDBLite consensus disorder prediction 146 203 - -
Cme06g01012 824 MobiDBLite consensus disorder prediction 152 177 - -
Cme06g01012 824 MobiDBLite consensus disorder prediction 291 305 - -
Cme06g01012 824 MobiDBLite consensus disorder prediction 276 323 - -
Cme06g01012 824 Coils Coil 777 804 - -
Cme06g01012 824 Coils Coil 700 741 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01012 - - - mcha:111011467 1193.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01012 Cme-Chr6:7277133 Cme10g00299 Cme-Chr10:1955019 4.34E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g707 . . . . . . . Bma14g02074 . Cmo18g01276 . . . . . . Cpe14g00103 Bhi01g01302 Tan01g0237 . . . Mch10g0147 . . . . . . . . Cone1ag1163 Cone5ag0873 . . . . . Cme06g01012 . . . . . . . . . . . . . Car16g00107 Car18g01161 Cpe09g00084 . . . . . . . . Cla05g00890 . Cec05g0981 . . Cmu05g0921 . . Csa03g01723 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011727 2 3 1 1 1 0 3 0 1 0 0 0 1 1 1 1 1 2 1 0 1 1 1 1 1 0 0 1 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01012 Cme_Chr06 FPKM 5.467107 6.592036 5.122379 5.380801 4.836451 4.008753 4.692562 4.209917 3.453671 4.26119